Detailed information on CNT30254425


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30100086Avena sativaOryza rufipogon13.7226.3788.05159forward

Expression of CNT30254425

Peptides detected in this lncRNA

>peptide 1 (91 aa)
FSFLFSLLCKSSSKDVGNARHTPLCESKNCIPPPPPSPANSSVSRAAVDMCLADSLPSAICCASPRPRMTPRRAQHAPPISCWFRLPDLLP*

>peptide 2 (47 aa)
MPCSFAASKCLLAWLCKPCRSMQVSWNESRHWLLCLLFETEKENPLS*

>peptide 3 (45 aa)
MPFYAGELERITPLAPLLAIRDGKRKSFILKTISAVRMIVLQLAE*

>peptide 4 (30 aa)
MFSVVISISTGIYLCICSCTTVYMALLLIE*

>peptide 5 (97 aa)
IFVPLLSPLQEQQQGCRQRTAHPPLRIEELHSTPASFSSKLLGVASRGRHVSRRFASIGHLLCIASPSHDSTPRPTRSTDLVLVSPPRFASLSNPKL*

Sequence

>CNT30254425
ATTTTCGTTCCTCTTCTCTCTCCTTTGCAAGAGCAGCAGCAAGGATGTAGGCAACGCACGGCACACCCCCCTCTGCGAATCGAAGAATTGCATTCCACCC
CCGCCTCCTTCTCCAGCAAACTCCTCGGTGTCGCGAGCCGCGGTCGACATGTGTCTCGCCGATTCGCTTCCATCGGCCATCTGTTGTGCATCGCCTCGCC
CTCGCATGACTCCACGCCGCGCCCAACACGCTCCACCGATCTCGTGTTGGTTTCGCCTCCCCGATTTGCTTCCTTAAGCAACCCCAAGCTCTAGCGAATC
GCTGGCGTCGGTGTCCACATCTCTCCAGCGGTGGCCGCGCGGGGCGCGCCTGCTCTCAGAATGATGCAAGGGGTGGTGACCAGCTTGGGGCAGCAACTGC
ATATCTCGTGAGAAAATTGGGTTTCAGAACATACCGATGATTTTCTTGCAAGTTGTGCAGTTGTTGTCTCAAGCTTGCCGCCTCCCTTTGCCAAAACTAT
GAAGTGCAATAGCAGAATTATGCAATGTAAAGCCATGAAAGATTGTTAGCAAACTGAAGTTTTGCAGTTGAGGTATTCTGCTTAATTTTTTACTGAGGGG
TGTTTCTGGAGTCCGTGCTTTCAATATAAAACCTGACTGCAGCAAAGACAGCGGCAAGCAGGAACACTGATTCAGGTCAAATTCAATGTGAAATCAGGCA
AGCCATTGCTCATATCTCATCACCACAGCAGATCTGTGTCCCACATTCCCAGAGATTCCAATGGAGTAGCTCATAATTGGGCTGATAAGATTCTCAGAGA
AAACCTGACCCAACCTGTCTTCAACCGTGTAAAGTCAGCTCATAGGATTAATCCATGCCTTGTAGCTTTGCTGCTTCAAAATGCCTCTTGGCATGGCTAT
GTAAACCATGCCGTTCTATGCAGGTGAGCTGGAACGAATCACGCCATTGGCTCCTCTGCTTGCTATTCGAGACGGAAAAAGAAAATCCTTTATCCTGAAA
ACAATTTCTGCAGTCCGAATGATAGTCCTGCAATTGGCCGAATAATTTCTGGAGGCCAGGAATGTTCAGCGTCGTTATAAGTATTTCAACTGGCATCTAT
CTATGCATCTGTAGTTGCACTACTGTGTACATGGCTCTTCTCCTGATTGAATAGCGAAG