Detailed information on CNT30254194


BLAST search results

BLAST vs Swiss-Prot:
sp|P69309|UBIQP_AVEFA, E-value = 2e-158

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30190365Avena sativaSecale cereale70.2161.9192.58660forward
CNT30397375Avena sativaTriticum turgidum5027.0194.47470forward
CNT30143319Avena sativaLolium perenne73.1978.0994.04688forward
CNT30370375Avena sativaOryza glumipatula73.7272.6489.75693forward
CNT30576485Avena sativaOryza barthii73.7274.3689.9693forward
CNT30583684Avena sativaEchinochloa crusgalli73.8333.0689.34694forward
CNT30603673Avena sativaOryza punctata73.6269.9791.47692forward

Expression of CNT30254194

Peptides detected in this lncRNA

>peptide 1 (47 aa)
MRRCWSGGMPSLSWILALTLSMVSEDSTSRVMVLPVRVLTKICICRE*

>peptide 2 (61 aa)
MRRCWSGGIPSLSWILALTLSMVSELSTSRVIVFPVRVFTKICIPPRRRSTKWRVDSFWML*

>peptide 3 (57 aa)
NKQPQDIRWDSKRTTGRLVQSKFIHTRNRTAIPANCLHETNTHTIGGLDGPLNQTVL*

>peptide 4 (61 aa)
MRRCWSGGMPSLSWILALTLSMVSELSTSRVMVFPVRVFTKICIPPRRRRTRWRVDSFWML*

Sequence

>CNT30254194
AACAAACAACCACAAGATATCAGATGGGACAGTAAACGGACAACAGGCAGATTAGTTCAAAGTAAATTTATTCATACTAGGAACAGGACTGCTATACCAG
CAAATTGTTTGCACGAAACGAACACACATACGATAGGGGGACTCGATGGTCCATTAAACCAGACAGTCCTTTAAACCAGACAGTACTTTAAACACAACGA
CCCAAAGGCACAGCAGCAGCTCCAACACCAAGACACTTACTGACCACCGCGGAGGCGGAGCACCAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCG
GCGAGGGTCCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTGGATCTTGGCCTTGACATTGT
CGATGGTGTCCGAGCTCTCAACCTCCAGAGTGATTGTCTTTCCAGTCAGGGTCTTCACGAAGATCTGCATACCACCGCGGAGACGGAGCACCAAGTGGAG
GGTGGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAGATGAGGCGCTGCTGGTCCGGGGGAATGCCCTCC
TTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCTGAGCTCTCAACCTCCAGAGTGATGGTCTTCCCGGTCAGGGTCTTCACAAAGATCTGCATAC
CACCACGCAGGCGGAGAACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTCCTGCCATCCTCCAGCTGCTTGCCGGCGAAGATGAG
GCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTATCAGAGGACTCAACCTCAAGGGTGATGGTCTTGCCG
GTGAGGGTCTTGACGAAGATCTGCATCTGTAGAGAATAAT