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Detailed information on CNT30254145


BLAST search results

BLAST vs Swiss-Prot:
sp|P69309|UBIQP_AVEFA, E-value = 5e-102

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30143320Avena sativaLolium perenne69.3373.1994.44486forward

Expression of CNT30254145

Peptides detected in this lncRNA

>peptide 1 (57 aa)
NKQPQDIRWDSKRTTGRLVQSKFIHTRNRTAIPANCLHETNTHTIGGLDGPLNQTVL*

>peptide 2 (61 aa)
MRRCWSGGIPSLSWILALTLSMVSELSTSRVIVFPVRVFTKICIPPRRRSTKWRVDSFWML*

>peptide 3 (43 aa)
MRRCWSGGMPSLSWILALTLSMVSEDSTSRVMVLPVRVLTKICI

Sequence

>CNT30254145
AAACAAACAACCACAAGATATCAGATGGGACAGTAAACGGACAACAGGCAGATTAGTTCAAAGTAAATTTATTCATACTAGGAACAGGACTGCTATACCA
GCAAATTGTTTGCACGAAACGAACACACATACGATAGGGGGACTCGATGGTCCATTAAACCAGACAGTCCTTTAAACCAGACAGTACTTTAAACACAACG
ACCCAAAGGCACAGCAGCAGCTCCAACACCAAGACACTTACTGACCACCGCGGAGGCGGAGCACCAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTC
GGCGAGGGTCCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTGGATCTTGGCCTTGACATTG
TCGATGGTGTCCGAGCTCTCAACCTCCAGAGTGATTGTCTTTCCAGTCAGGGTCTTCACGAAGATCTGCATACCACCGCGGAGACGGAGCACCAAGTGGA
GGGTGGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTCCTGCCATCCTCCAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGGGGGATGCCCTC
CTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTATCAGAGGACTCAACCTCAAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCATC
T