Detailed information on CNT302540


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30677300Zea maysSetaria viridis20.6315.6994.48145forward
CNT30524453Zea maysSetaria italica25.8924.9792.86182forward
CNT30353506Zea maysEragrostis tef25.4618.8893.3179forward
CNT30365046Zea maysSorghum bicolor27.0319.7393.68190forward
CNT30581942Zea maysEchinochloa crusgalli23.3335.2790.85164forward
CNT30498473Zea maysDigitaria exilis18.3530.7190.7129forward

Expression of CNT302540

Peptides detected in this lncRNA

>peptide 1 (36 aa)
QKKSSHYFLSIKHFTINSCLWKHSFGELRSKIQELY*

>peptide 2 (64 aa)
MRRFLPPLDNVHAWAWHVLHFRPSHTALSPVKSRTAAAHDLASLPACGGRRGHRGAACPRGPVR*

>peptide 3 (73 aa)
MTWHRCRLVGVEGATGVQLVLEVQSVDDPVVLGAADEDDLRDHGDHQVDGDAVAEIAEGVSVEEQGSGLHAFR*

Sequence

>CNT302540
CTCAAAAAAAATCAAGCCACTATTTTCTGAGTATAAAACATTTCACGATTAATTCTTGTCTCTGGAAACACTCCTTTGGAGAATTAAGAAGTAAAATTCA
GGAGCTCTATTAGATTGACCACAAAGTAACTTAGGCTACGTTTGTTTCCTCCTATACGTTGAATTATACTAGAGGGGTAAAATATCACTTTAAAATCACA
AATAAGTTAAAATAAGCTAGCATTCACAAATAATCCAACTCAAACGCACCCTTAATGTGCACGAACTAATTAGCTTTCAAAAACTTAGCATATCTCAGGC
GCAATCTGAAGCAGCAGTCATATCAGAGATCAGAATGAGAAGGTTTCTTCCCCCTCTCGATAATGTACACGCATGGGCATGGCACGTTCTTCACTTCAGA
CCCTCACACACAGCTCTTTCCCCGGTAAAATCAAGGACGGCAGCAGCGCATGACTTGGCATCGCTGCCGGCTTGTGGGGGTCGAAGGGGCCACCGGGGTG
CAGCTTGTCCTCGAGGTCCAGTCCGTTGATGATCCGGTAGTACTCGGCGCCGCCGACGAGGACGACCTCCGCGATCACGGCGACCACCAGGTTGATGGGG
ATGCTGTTGCCGAAATAGCTGAGGGTGTTTCCGTCGAGGAGCAGGGCTCCGGTCTGCATGCATTCAGGTGACAGACACCATCCGTGAACTTTGAGTTCAA
ACT