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Detailed information on CNT30253692


BLAST search results

BLAST vs Swiss-Prot:
sp|P69326|UBIQ_WHEAT, E-value = 3e-46

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30524139Avena sativaSetaria italica21.6757.5493.45229forward
CNT30190495Avena sativaSecale cereale20.8142.5595.91220forward

Expression of CNT30253692

Peptides detected in this lncRNA

>peptide 1 (58 aa)
QTQEFDTKFRVHLFIHHTIPSQVAAPQQKFVRDKVTPHFTTTRQELTQERTIQGHTGS*

>peptide 2 (93 aa)
MRRCWSGGMPSLSWILALTLSMVSDDSTSRVMVLPVRVFTKICICIFTKYRAESVRVNVNGNQQPAGHDTREKKSKQYESTNISIKRWNRLQS*

>peptide 3 (29 aa)
MNRTNSNRTSNRQIGEEYHDNPSRINSNR*

>peptide 4 (31 aa)
CRHKNLTLSLGFTYSFITQFHPKLLHHSRSL*

Sequence

>CNT30253692
TGCAGACACAAGAATTTGACACTAAGTTTAGGGTTCACTTATTCATTCATCACACAATTCCATCCCAAGTTGCTGCACCACAGCAGAAGTTTGTAAGAGA
CAAGGTAACACCACACTTCACCACAACACGGCAGGAACTAACACAAGAGCGGACCATACAAGGACACACCGGCAGCTAAACTGGAGCACACAGAAGACAG
CAGACTTGCAAACCCAGAGACAGAAAAAGCTCCTCACTGGCCACCACGGAGACGGAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCA
AGGGTACGGCCGTCCTCAAGCTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGA
TGGTGTCAGACGACTCGACCTCAAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACAAAGATCTGCATCTGTATTTTTACAAAGTATAGAGCAGAGTCAGT
TAGAGTCAACGTTAACGGAAATCAGCAACCAGCAGGCCACGATACTAGAGAGAAGAAATCAAAGCAGTATGAATCAACAAACATCTCAATAAAAAGATGG
AACAGACTACAGTCGTAACCCTGTTTTAGGGGAATCAACAAGCTAGGCGAGTCAAGATTAATCAAGAATATAACGTCAAACAACCACAATTTTGAGGATC
GATGTACACCTACAGATCTTAGAAGCAATTGTGAGGTCCAACATGAGCGCTACAGAATAAGAAATCCAAGAGAATACTAAGGGGATTTAGCTCAACCGGA
GCGGAATCAGCAAATTACAGCTATTACACCTAAACAGATGAACCGAACTAACAGCAATCGAACCTCCAATAGGCAGATTGGAGAGGAATATCACGACAAC
CCGAGCCGAATCAACAGCAATCGATAAACAATAATAGTACCACCGCCCGCAGATCTACTACAAACTACTAACCGATCGAGCGGAACCAACAAACAATCGA
TCTACGGTAGATCGTACCAACGATCACAGAACACGAACAGGAGAAGGAAGGATCGGA