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Detailed information on CNT30253560


BLAST search results

BLAST vs Swiss-Prot:
sp|P69309|UBIQP_AVEFA, E-value = 6e-102

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30396078Avena sativaTriticum turgidum67.9225.7193.43487forward
CNT30666357Avena sativaTriticum dicoccoides64.7155.793.53464forward
CNT30686251Avena sativaTriticum urartu64.7121.8193.75464forward
CNT30722325Avena sativaTriticum spelta64.7160.4294.4464forward
CNT30592842Avena sativaEragrostis curvula64.1656.5893.04460forward

Expression of CNT30253560

Peptides detected in this lncRNA

>peptide 1 (61 aa)
MRRCWSGGIPSLSWILALTLSMVSELSTSRVMVFPVRVFTKICIPPRRRSTRWRVDSFWML*

>peptide 2 (43 aa)
MRRCWSGGIPSLSWILALTLSMVSEDSTSRVMVLPVRVFTKICI

Sequence

>CNT30253560
CACCATCCAGCAAACTTAGAATAAGCAAAGCAGCGGGGGCATAAGAACTGGAGGGAAACAATCGAGCACAGGCAGATTACTCCAAAGTTCACTTATTCAT
TACTACAAACTGATGAAACATCAACTGTTTTCACGACACCAACACATAGGAGACTCCGTTCCATTACACGACTTGACACAAACCAGACAGACTTGACTTC
AAGGGCGACAGGACAGCCCACAAGGCACAGCAGCAGCTCCAACACCAAGACACTTACTGACCACCACGGAGGCGGAGCACCAGGTGGAGGGTGGACTCCT
TCTGGATGTTGTAGTCGGCGAGGGTACGGCCATCCTCCAGCTGCTTGCCAGCAAAGATGAGGCGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTGGAT
CTTGGCCTTGACATTGTCGATGGTGTCCGAGCTCTCAACCTCCAGGGTGATGGTCTTCCCAGTCAGGGTCTTCACGAAAATCTGCATACCACCACGCAGG
CGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTACGGCCATCCTCCAGCTGCTTGCCAGCAAAGATGAGGCGCTGCTGGT
CCGGGGGGATACCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCAATGGTGTCCGAGGACTCTACCTCAAGGGTGATGGTCTTGCCAGTGAGGGTCTT
CACAAAGATCTGCATCT