CANTATAdb - search

Detailed information on CNT30253358

BLAST search results

BLAST vs Swiss-Prot:
sp|P69309|UBIQP_AVEFA, E-value = 2e-101

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30189291	Avena sativa	Secale cereale	56.88	61.65	93.95	463	forward
CNT30461506	Avena sativa	Saccharum spontaneum	57.13	39.11	92.26	465	forward
CNT30580899	Avena sativa	Echinochloa crusgalli	57.13	96.27	92.26	465	forward
CNT30116053	Avena sativa	Oryza nivara	57	66	92.89	464	forward

Expression of CNT30253358

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MVSELSTSRVMVFPVRVFTKICIPPRRRSTRWRVDSFWML*

>peptide 2 (48 aa)
RGSSSTEHRTQLTPCEHIQNIITEAATETKEKNCMKTFNRKISDETVN*

>peptide 3 (35 aa)
MPSLSWILALTLSMVSEDSTSRVMVLPVRVFTKICI

>peptide 4 (35 aa)
GEAVHLQNIGHNSHHVNTFKTSSQKQQQKQKRKTA*

Sequence

>CNT30253358
GGAGAGGCAGTTCATCTACAGAACATAGGACACAACTCACACCATGTGAACACATTCAAAACATCATCACAGAAGCAGCAACAGAAACAAAAGAGAAAAA
CTGCATGAAAACATTCAACCGCAAGATATCAGATGAGACAGTAAATTGAGCACACACATTACTACAAAGTTCACTTATTCATAAAGGGACTGCTGTACCA
GCAATTGTTTGCACGAAACCAACACAGGATAGGAGGACACGATGGCCCATTAAACCTGACACAGTACTTACGATAGACACTTTACTTGGAAGGGCGACAA
GGCAGCCCACCGGACGACAAGGCACAGCAGTAGCTCCACCGCCAAGACACTTACTGACCACCACGGAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCT
GGATGTTGTAGTCGGCGAGGGTGCGGCCATCCTCCAGCTGTTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGGGATCCCCTCCTTGTCCTGGATCTT
GGCCTTGACATTGTCGATGGTGTCCGAGCTCTCAACCTCCAGAGTGATGGTCTTCCCAGTCAGGGTCTTCACGAAGATCTGCATACCACCACGGAGGCGG
AGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCAAGGGTGCGGCCATCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCG
GGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCAGAAGACTCCACCTCAAGGGTGATGGTCTTGCCGGTGAGGGTCTTCAC
GAAGATCTGCATCT