Detailed information on CNT30253294


BLAST search results

BLAST vs Swiss-Prot:
sp|Q43872|PER64_ARATH, E-value = 2e-19

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30179783Avena sativaSecale cereale35.1610.7783.3390forward
CNT30290507Avena sativaTriticum aestivum23.0512.3289.8359forward

Expression of CNT30253294

Peptides detected in this lncRNA

>peptide 1 (83 aa)
LVHGARRHVAVALGLELGGEIGVDGRVGVGLRREAVPEGVAVGDAERVRAGERNEVRHAEAPAAERGDERGRVQGGRRQGDDGP

>peptide 2 (84 aa)
VWFTVPAGTSPSHLALSLAAKSGSMAGSVSVSGVKRFLKELQWEMPNVCAPESATRSVTLRPRPPKEEMSAVAFKEGAGRETTGP

Sequence

>CNT30253294
GTCTGGTTCACGGTGCCCGCCGGCACGTCGCCGTCGCACTTGGCCTTGAGCTTGGCGGCGAAATCGGGGTCGATGGCCGGGTCGGTGTCGGTCTCCGGCG
TGAAGCGGTTCCTGAAGGAGTTGCAGTGGGAGATGCCGAACGTGTGCGCGCCGGAGAGCGCAACGAGGTCCGTCACGCTGAGGCCCCGGCCGCCGAAAGA
GGAGATGAGCGCGGTCGCGTTCAAGGAGGGCGCCGGCAGGGAGACGACGGGCCCGC