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Detailed information on CNT30253260


BLAST search results

BLAST vs Swiss-Prot:
sp|P27497|CB29_MAIZE, E-value = 2e-173

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30395674Avena sativaTriticum turgidum78.2291.2388.01801forward
CNT30686626Avena sativaTriticum urartu78.2295.9387.89801forward

Expression of CNT30253260

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MAQRLWITSNSLFFAKVSGSAESPAVSQP*

>peptide 2 (32 aa)
MARRPFLSSFTFSSANASGSSARPRGSKLPPG*

>peptide 3 (38 aa)
MPRGHRPDPEGRNCRPGRAGQQSHLVGHQKHGTPRRHP*

>peptide 4 (38 aa)
MRASPKSVDDGRFFTTFPVKVEEETDMVVVAIVVVKPV*

Sequence

>CNT30253260
TCTTTCAGTAGCATAGTGCAACAAATAGCTGGATTGATGCAAGAGCAAGACATAGATGGTGGGAGAATTCATACTTTCACATAAAAATTCTCGTAATTTA
CATCGTGGTTGTACAAAGAAGACTTCACAACCGTGAGCATAGTCTCCAAGAAGTCAGTCACTTGCCGGGGACGAAATTGGTGGCAAATGCCCATGCGTTG
TTGTTGACAGGGTCGGCGATGTGGTCGGCAAGGTTCTCTAGTGGGCCCTTGCCGGTGACGATGGCTTGAACAAAGAAGCCGAACATCGAGAACATGGCGA
GGCGACCGTTCTTGAGTTCCTTCACCTTCAGCTCAGCAAATGCCTCGGGGTCATCGGCCAGACCCAGAGGGTCGAAACTGCCGCCCGGGTAGAGCGGGTC
AACAATCTCACCTAGTGGGCCACCAGAAACACGGTACCCCTCGACGGCACCCATGAGCACAACCTGGCAGGCCCAGATAGCGAGGATGCTTTGTGCGTGG
ACAAGGCTAGGGTTGCCGAGGTAGTCGAGGCCACCCTCACTGAAGATCTGGGAGCCGGCCTTGAACCAGACAGCCTCACCAAACTTGACACCATTTCGGG
CAAGCAACTCAGGGAAGACACATCCCAGTGCCCCGAGCATGGCCCAACGACTGTGGATCACCTCCAACTCCCTGTTCTTCGCGAAAGTCTCAGGGTCAGC
CGAAAGTCCGGCGGTGTCCCAGCCATAGTCACCGGGGAACTCACCGGTCAGGTAGCTCGGGGGCTCACCGGATAGCGGGCCAAGGTAGAGCACACGGTCA
GCACCGTACCATGGGCTGCCGGAGGAGACCTGCTTAGCCTTCGCTGCAGTCTTGCGCATCGTAATGCGGGCCTCGCCGAAAAGTGTGGATGATGGCAGAT
TCTTCACTACCTTTCCAGTGAAGGTCGAGGAGGAGACAGACATGGTGGTGGTGGCCATTGTAGTGGTAAAACCAGTGTAACTTGTTTGTGTTCTCAAAGA
GAGGTGTGTGAATGTGGAGCTTGT