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Detailed information on CNT30253208


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9ZRB0|TBB3_WHEAT, E-value = 1e-108

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30522155Avena sativaSetaria italica39.8554.4984.13479forward
CNT30534291Avena sativaEucalyptus grandis14.9828.2688.89180forward
CNT30516889Avena sativaJuglans regia22.9645.6282.25276forward
CNT30617295Avena sativaSesamum indicum16.8149.2781.68202forward
CNT30629386Avena sativaVigna unguiculata18.7287.2184.44225forward
CNT30486254Avena sativaOlea europaea14.7346.2187.01177forward
CNT30710178Avena sativaGlycine max11.933.7386.01143forward
CNT30168132Avena sativaPistacia vera11.433.3383.94137forward
CNT3092760Avena sativaSolanum tuberosum12.421.5384.56149forward
CNT30291318Avena sativaTriticum aestivum21.4677.4885.27258forward
CNT30390564Avena sativaTriticum turgidum14.8958.8890.5179forward
CNT30562825Avena sativaActinidia chinensis27.1259.0682.52326forward
CNT30586804Avena sativaMusa acuminata16.9726.4282.35204forward
CNT30511260Avena sativaSolanum lycopersicum14.7343.9285.88177forward
CNT30553024Avena sativaOryza glaberrima45.5938.3881.39548forward
CNT305432Avena sativaZea mays30.78100.8288.65370forward
CNT3041960Avena sativaChlamydomonas reinhardtii13.3947.2188.82161forward
CNT30722476Avena sativaTriticum spelta32.6158.5994.39392forward
CNT30595966Avena sativaOryza meridionalis17.0533.4483.41205forward
CNT30369350Avena sativaOryza glumipatula28.6249.585.76344forward
CNT30570854Avena sativaVitis vinifera12.1572.6486.3146forward
CNT30706519Avena sativaPrunus avium33.4448.4984.58402forward
CNT3033661Avena sativaTheobroma cacao15.9792.3188.02192forward
CNT3057373Avena sativaAmborella trichopoda26.4658.3580.5318forward
CNT30328090Avena sativaAsparagus officinalis25.5490.8385.99307forward
CNT30119164Avena sativaCitrus clementina14.4837.3484.48174forward
CNT3036150Avena sativaCucumis melo9.433.5384.07113forward
CNT30150001Avena sativaBrachypodium distachyon6.6625.3293.7580forward
CNT3099978Avena sativaOryza rufipogon25.3737.6586.56305forward
CNT30575061Avena sativaOryza barthii33.9444.8885.05408forward
CNT30333708Avena sativaCynara cardunculus32.0347.5381.56385forward
CNT3049477Avena sativaCucumis sativus8.3235.2191100forward

Expression of CNT30253208

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MTKNNENDLYHEYQNYNGAHAPDISTDQIHNRK*

>peptide 2 (46 aa)
MSHTLDFTLLGIHSTKYDEFLFWTFSICSSTSLVLIFPRNIAEAVR*

>peptide 3 (40 aa)
MKTTCIMSIKTIMEHMRQTYPLIKYTTENRNNITIEMTAY*

>peptide 4 (53 aa)
YANITIRSVEAAPSTYTNSSKNRFTKARKASIKRHEPPKDLSAPQAPPNRQKS*

>peptide 5 (52 aa)
MLLSASVNSISSMPSPVYQCKKAFLLNIAVNCSLTRRNISWIEACGRDVTHT*

>peptide 6 (71 aa)
TLISQFAASKQHHQHTQTVQKIGSPKQEKHLLSVMNHLKIYPHRKHHQTDRNRKHKAHLPDSKTAEQGQMA*

>peptide 7 (71 aa)
MKKWRRGKGIKLTASFRRSEFSCPGKRRQQVTPLIVAEIRWFRSPTAKRHRKRLSDQNTCTKWQKQMRNKV*

Sequence

>CNT30253208
TACGCTAATATCACAATTCGCAGCGTCGAAGCAGCACCATCAACATACACAAACAGTTCAAAAAATCGGTTCACCAAAGCAAGAAAAGCATCTATTAAGC
GTCATGAACCACCTAAAGATCTATCCGCACCGCAAGCACCACCAAACCGACAGAAATCGTAAACACAAGGCACATCTACCAGACAGCAAGACGGCTGAAC
AAGGTCAGATGGCTTAGGCAGCCTCCTCTTCCTCTTCCTCCTCGTACTCTTCCTCCTCATCAGCTGTGGCATCCTGGTACTGCTGGTACTCGGCCACCAG
GTCGTTCATGTTGCTCTCGGCCTCAGTGAACTCCATCTCATCCATGCCCTCCCCGGTGTACCAGTGCAAGAAAGCCTTCCTCCTGAACATAGCTGTGAAC
TGCTCGCTCACACGACGGAACATCTCCTGGATTGAGGCCTGTGGGAGGGATGTCACACACACTTGACTTCACATTGTTGGGGATCCACTCAACAAAGTAC
GACGAGTTCTTGTTCTGGACGTTCAGCATCTGCTCATCAACCTCCTTGGTGCTCATCTTCCCACGGAACATAGCAGAGGCTGTGAGGTAGCGACCATGCC
TTGGGTCAGCAGCACACATCATGTTCTTTGAGTCCCACATCTGCTGGGTCAACTCGGGAACAGTGAGGGCACGGTACTGCTGAGAGCCCCTTGAGGTCAG
TGGTGCAAAGCCAACCATGAAGAAATGGAGGCGAGGGAAAGGAATCAAGTTGACTGCTAGTTTCCGGAGGTCAGAGTTCAGCTGTCCAGGGAAGCGAAGG
CAGCAAGTAACACCACTCATTGTTGCAGAAATAAGATGGTTCAGATCACCAACTGCAAAAAGGCATAGGAAAAGACTCAGTGACCAGAATACATGTACAA
AATGGCAGAAACAAATGAGAAACAAGGTATAACAGCTAGAAAAATGCCGATATTCGTTAGTCTTTGAGACAGATCATACAGGTACTAGTATGACAAAAAA
TAATGAAAACGACTTGTATCATGAGTATCAAAACTATAATGGAGCACATGCGCCAGACATATCCACTGATCAAATACACAACAGAAAATAGGAACAATAT
CACAATAGAGATGACTGCATACTAGAAAATATTAGAGATGACTGTAGACCACTATAATTACAGGGAGAATAGTATGGGAACCAAGCACAGTTGAGTAATC
AC