Detailed information on CNT30253187


BLAST search results

BLAST vs Swiss-Prot:
sp|Q76H85|H4_SILLA, E-value = 4e-40

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30701199Avena sativaQuercus lobata33.4616.2481.01179forward
CNT30302120Avena sativaTriticum aestivum53.2760.996.14285forward
CNT30220695Avena sativaHordeum vulgare30.8437.8497.58165forward
CNT30394714Avena sativaTriticum turgidum53.0864.6995.42284forward
CNT30441215Avena sativaAegilops tauschii53.0851.2696.83284forward
CNT30143346Avena sativaLolium perenne52.948.5496.82283forward

Expression of CNT30253187

Peptides detected in this lncRNA

>peptide 1 (61 aa)
MSPEMRFTPPRRARRRMAGLVMPWMLSRSTFRWRFAPPLPSPLPPLPRPDISGGIGWCAVGW

>peptide 2 (43 aa)
KCEISIPFYQTSGQQFRPRYRSKHQIGQGRESKQQRDTADYNY*

Sequence

>CNT30253187
CAAGTGTGAAATTTCCATTCCATTCTACCAAACCAGCGGTCAACAGTTCCGTCCTAGGTACAGATCTAAACACCAGATAGGACAAGGCAGAGAGAGCAAA
CAACAGCGAGATACTGCCGACTACAACTACTAAACCACAGACCATGACAAACCCTAAGCAGAGAGGCTAGCTTTCTATCTGATGACGATTCCGCGAGCAC
CGAACGGATCTCTGTCCCGGCCTAGCCGCCGAAGCCGTAGAGGGTGCGTCCCTGGCGCTTGAGCGCGTAGACGACGTCCATGGCGGTGACGGCGTCGCGG
ATGACGTTCTCGAGGAAGATCTTGAGCACGCCGCGGGTCTCCTCGTAGATGAGCCCCGAGATGCGCTTCACGCCGCCGCGGCGAGCGAGACGGCGGATGG
CCGGCTTGGTGATGCCCTGGATGTTGTCGCGGAGCACCTTCCGGTGGCGCTTCGCGCCGCCCTTGCCCAGCCCCTTGCCTCCCTTGCCGCGGCCCGACAT
CTCCGGTGGGATTGGTTGGTGCGCTGTGGGGTGGG