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Detailed information on CNT30253103


BLAST search results

BLAST vs Swiss-Prot:
sp|P69309|UBIQP_AVEFA, E-value = 7e-102

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30304238Avena sativaTriticum aestivum62.9660.8994.83464forward
CNT30659411Avena sativaTriticum dicoccoides62.9661.2192.67464forward
CNT30107357Avena sativaOryza longistaminata62.6961.8592.86462forward
CNT30115854Avena sativaOryza nivara62.9661.5492.67464forward

Expression of CNT30253103

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MVSELSTSRVMVFPVRVFTKICIPPRRRSTRWRVDSFWML*

>peptide 2 (35 aa)
MPSLSWILALTLSMVSEDSTSRVMVLPVRVFTKICI

Sequence

>CNT30253103
GCAACAGAAACAAAAGAGAAAAACTGCATGAAAACATTCAACCGCAAGATATCAGATGAGACAGTAAATTGAGCACACACATTACTACAAAGTTCACTTA
TTCATAAAGGGACTGCTGTACCAGCAATTGTTTGCACGAAACCAACACAGGATAGGAGGACACGATGGCCCATTAAACCTGACACAGTACTTACGATAGA
CACTTTACTTGGAAGGGCGACAAGGCAGCCCACCGGACGACAAGGCACAGCAGTAGCTCCACCGCCAAGACACTTACTGACCACCACGGAGGCGGAGCAC
CAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCATCCTCCAGCTGTTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGGG
ATCCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCCGAGCTCTCAACCTCCAGAGTGATGGTCTTCCCAGTCAGGGTCTTCACGAAGA
TCTGCATACCACCACGGAGGCGGAGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCAAGGGTGCGGCCATCCTCCAGCTGCTTGCCGGC
AAAGATCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCAGAAGACTCCACCTCAAGGGTGATG
GTCTTGCCGGTGAGGGTCTTCACGAAGATCTGCATCT