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Detailed information on CNT30253100


BLAST search results

BLAST vs Swiss-Prot:
sp|P27497|CB29_MAIZE, E-value = 8e-172

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30225735Avena sativaHordeum vulgare87.7389.9188.78722forward
CNT30686160Avena sativaTriticum urartu85.382.8889.6702forward

Expression of CNT30253100

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MARRPFLSSFTFSSANASGSSARPRGSKLPPG*

>peptide 2 (29 aa)
MAQRLWITSNSLFFAKVSGSAESPAVSQP*

>peptide 3 (54 aa)
SHNLHRGSTNKTTASQSTVRIDSKTPQLLAGDKVGGECPCVVVHGIGDVVAEVL*

>peptide 4 (38 aa)
MPRGHRPGREGQSCRPGRAGQRSHLVGRQQRGTPRRHP*

Sequence

>CNT30253100
TCTCATAATTTACATCGTGGTAGTACAAATAAGACTACAGCATCACAGTCAACCGTGAGGATAGACTCTAAGACACCTCAGTTACTTGCCGGGGACAAAG
TTGGTGGCGAATGCCCATGCGTTGTTGTTCACGGGATCGGCGATGTGGTCGCCGAGGTTCTCTAGTGGGCCCTTGCCGGTGACTATGGCTTGAACAAAGA
AGCCGAACATCGAAAACATGGCTAGGCGACCGTTCTTGAGTTCCTTCACCTTCAGCTCAGCAAATGCCTCGGGGTCATCGGCCAGGCCGAGAGGGTCAAA
GCTGCCGCCCGGGTAGAGCGGGTCAACGATCTCACCTAGTGGGCCGCCAGCAACGCGGTACCCCTCGACGGCACCCATGAGCACAACCTGGCAGGCCCAG
ATAGCGAGGATGCTTTGTGCGTGGACGAGGCTAGGGTTGCCGAGGTAGTCGAGGCCACCCTCACTGAAGATCTGGGAGCCGGCCTTGAACCAGACAGCCT
CACCAAACTTGACACCATTTCGGGCGAGCAGCTCAGGGAAGACACATCCCAGTGCCCCGAGCATGGCCCAACGACTGTGGATCACCTCCAACTCCCTGTT
CTTCGCGAAAGTCTCAGGGTCAGCCGAAAGTCCGGCGGTGTCCCAGCCATAGTCACCGGGGAACTCACCGGTCAGGTAGCTCGGGGGCTCACCGGATAGC
GGGCCGAGGTAGAGCACACGGTCGGCACCGTACCATGGGCTACCTGAGGAGACCTGCTTAGCCTTCACAGCAGTCTTGCGCATTGTAATGCGGGCCTCAC
CGAGAAGTGGGGACGATGCTACA