Detailed information on CNT30252939


BLAST search results

BLAST vs Swiss-Prot:
sp|P04784|CB21_WHEAT, E-value = 5e-176

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30189591Avena sativaSecale cereale75.4781.9487.92803forward

Expression of CNT30252939

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MARRPFLSSFTFSSANASGSSARPRGSKLPPG*

>peptide 2 (38 aa)
MPRGHRPDPEGRNCRPGRAGQQSHLVGHQKHGTPRRHP*

>peptide 3 (56 aa)
MADSSLPFQRRSRRRQTWWWWPLECITGVSCLCSPGECGGGGGFRGHTDVVFKGAEV

>peptide 4 (29 aa)
MAQRLWITSNSLFFAKVSGSAESPAVSQP*

>peptide 5 (61 aa)
MRASPKSVDDGRFFTTFPAKVEEETDMVVVAIGVYNRCVLFVFSWRVWRWRWFQRTHGRGI*

Sequence

>CNT30252939
TCTTTCAGTAGCATAGTGCAACAAATAGCTGGATTGATGCAAGAGCAAGACATAGATGGTGGGAGAATTCATACTTTCACATAAAAATTCTCGTAATTTA
CATCGTGGTTGTACAAAGAAGACTTCACAACCGTGAGCATAGTCTCCAAGAAGTCAGTCACTTGCCGGGGACGAAATTGGTGGCAAATGCCCATGCGTTG
TTGTTGACAGGGTCGGCGATGTGGTCGGCAAGGTTCTCTAGTGGGCCCTTGCCGGTGACGATGGCTTGAACAAAGAAGCCGAACATCGAGAACATGGCGA
GGCGACCGTTCTTGAGTTCCTTCACCTTCAGCTCAGCAAATGCCTCGGGGTCATCGGCCAGACCCAGAGGGTCGAAACTGCCGCCCGGGTAGAGCGGGTC
AACAATCTCACCTAGTGGGCCACCAGAAACACGGTACCCCTCGACGGCACCCATGAGCACAACCTGGCAGGCCCAGATAGCGAGGATGCTTTGTGCGTGG
ACAAGGCTAGGGTTGCCGAGGTAGTCGAGGCCACCCTCACTGAAGATCTGGGAGCCGGCCTTGAACCAGACAGCCTCACCAAACTTGACACCATTTCGGG
CAAGCAACTCAGGGAAGACACATCCCAGTGCCCCGAGCATGGCCCAACGACTGTGGATCACCTCCAACTCCCTGTTCTTCGCGAAAGTCTCAGGGTCAGC
CGAAAGTCCGGCGGTGTCCCAGCCATAGTCACCGGGGAACTCACCGGTCAGGTAGCTCGGGGGCTCACCGGATAGCGGGCCGAGGTAGAGCACACGGTCA
GCACCGTACCATGGGCTACTAGAGGAGACTTGCTTAGCCTTTGCTGCAGTCTTGCGCATCGTAATGCGGGCCTCGCCAAAAAGTGTGGACGATGGCAGAT
TCTTCACTACCTTTCCAGCGAAGGTCGAGGAGGAGACAGACATGGTGGTGGTGGCCATTGGAGTGTATAACCGGTGTGTCCTGTTTGTGTTCTCCTGGAG
AGTGTGGAGGTGGAGGTGGTTTCAGAGGACACACGGACGTGGTATTTAAGGGAGCGGAGGTGAT