Detailed information on CNT30252718


BLAST search results

BLAST vs Swiss-Prot:
sp|P04784|CB21_WHEAT, E-value = 4e-176

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30139746Avena sativaLolium perenne78.294.6691.53886forward

Expression of CNT30252718

Peptides detected in this lncRNA

>peptide 1 (52 aa)
MADSSLPFQRRSRRRQTWWWWPLECITGVSCLCSPGECGGGGGFRGHTDVVFK

>peptide 2 (29 aa)
MAQRLWITSNSRFFAKVSGSAESPAVSQP*

>peptide 3 (33 aa)
VSLNCSVVDKFQQKKAHKSQVYQIYIQQHICTK*

>peptide 4 (40 aa)
MISPSGPPAIRYPSTAPMSTTWHAQIARMLCAWTRLGLPR*

>peptide 5 (61 aa)
MRASPKSVDDGRFFTTFPAKVEEETDMVVVAIGVYNRCVLFVFSWRVWRWRWFQRTHGRGI*

>peptide 6 (63 aa)
MTKLLQGMEYWNILQCFCTNISLIYIVVVQTDYSITVHREDSLQDSSVTCRGRSWWRMPMRCC*

>peptide 7 (84 aa)
MDEARVAEVVEATLTEDLGASLEPDGLAKLDAIASEKFREDTTECPEHGPTTVDHLQLSVLRESLGVSGKSSCVPAIVTWELAS*

Sequence

>CNT30252718
GTTTCACTGAATTGCTCTGTGGTGGATAAATTTCAGCAAAAAAAGGCACATAAATCGCAAGTATACCAGATATACATTCAGCAGCATATCTGCACCAAAT
GACTAAACTGCTGCAAGGCATGGAATATTGGAATATCTTACAATGCTTTTGCACAAACATATCCTTAATTTACATCGTGGTAGTACAAACAGACTACAGC
ATCACAGTTCACCGTGAGGATAGTCTCCAAGACAGCTCAGTTACTTGCCGGGGACGAAGTTGGTGGCGAATGCCCATGCGTTGTTGTTGACTGGGTCGGC
GATGTGGTCTGCGAGGTTCTCTAGTGGTCCCTTGCCAGTGACAATGGCTTGAACAAAGAAGCCAAACATCGAGAACATAGCGAGGCGGCCGTTCTTGAGT
TCCTTCACCTTTAGCTCCGCAAATGCCTCGGGGTCGTCAGCCAGGCCGAGAGGATCAAAGCTACCACCCGGGTAGAGCGGGTCAATGATCTCACCAAGTG
GTCCACCAGCAATACGGTACCCCTCAACGGCACCCATGAGCACGACCTGGCATGCCCAAATAGCCAGGATGCTTTGTGCATGGACGAGGCTAGGGTTGCC
GAGGTAGTCGAGGCCACCCTCACTGAAGATCTGGGAGCCAGCCTTGAACCAGACGGCCTCGCCAAACTTGACGCCATTGCGAGCGAGAAGTTCAGGGAAG
ACACAACCGAGTGCCCCGAGCATGGCCCAACGACTGTGGATCACCTCCAACTCTCGGTTCTTCGCGAAAGTCTCGGGGTCAGCGGAAAGTCCAGCTGTGT
CCCAGCCATAGTCACCTGGGAACTCGCCAGTTAGGTAGCTCGGGGGCTCACCGGATAGCGGGCCGAGGTAGAGCACACGGTCAGCACCGTACCATGGGCT
ACTAGAGGAGACTTGCTTAGCCTTTGCTGCAGTCTTGCGCATCGTAATGCGGGCCTCGCCAAAAAGTGTGGACGATGGCAGATTCTTCACTACCTTTCCA
GCGAAGGTCGAGGAGGAGACAGACATGGTGGTGGTGGCCATTGGAGTGTATAACCGGTGTGTCCTGTTTGTGTTCTCCTGGAGAGTGTGGAGGTGGAGGT
GGTTTCAGAGGACACACGGACGTGGTATTTAAG