Detailed information on CNT30252573


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SBL5|CHS4_SORBI, E-value = 7e-121

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30524257Avena sativaSetaria italica17.244.1983.33156forward
CNT30156270Avena sativaPistacia vera8.8229.748580forward
CNT30466778Avena sativaSaccharum spontaneum19.0760.784.39173forward

Expression of CNT30252573

Peptides detected in this lncRNA

>peptide 1 (39 aa)
MEFQSVMPIGAKEASSALKIFFEMTTGTSLLSCKVSPPI*

>peptide 2 (34 aa)
MGRRGPTEVHGVHLRAYNQDTRAMVVLCQVLGHA*

>peptide 3 (46 aa)
PVVAMPSCAERLRISSRMKRTHALDMLPYSERTCRVALIRFLSRQA*

>peptide 4 (75 aa)
MPTPVVVQNTRWDILDIGWPHSLIALSEAFFASLGISLHRIARRALNDGAMNSAMFGFSWIYSSVRCMYLFRIIVP

>peptide 5 (90 aa)
MGTSGSAPTINAAAPSPKSAWPTKESRWAAEGPRKYMAFISAHTTRTRAPWLFSAKSLATRSTVPPAKQPCMYNMTRFTDGLRPSNLTSW*

Sequence

>CNT30252573
GCCCGTAGTGGCCATGCCTTCTTGTGCGGAGCGCTTACGGATCTCATCTAGGATGAAGAGGACGCACGCGCTGGACATGTTGCCATACTCGGAGAGGACG
TGTCGGGTGGCTCTCATCCGCTTCTTGTCGAGACAGGCCTGAGCCTCCACCATGTCTAGGATGGCCGCTCCGCCGGGGTGAGCCACCCAGAAGATGGAGT
TCCAGTCGGTGATGCCCATCGGCGCGAAGGAGGCCTCCAGTGCACTCAAAATATTCTTCGAGATGACCACTGGCACGTCTCTGTTGAGTTGTAAGGTGAG
CCCCCCCATCTAGGAGATCGCCCACAATGAAACCATCCGTGTCTGGCAGTATGGTCTGACTTGTTGACACTACCTGGAACAGAGGCCTCTCCATGGGAAC
CTCAGGGTCGGCTCCGACGATCAACGCGGCGGCCCCATCACCGAAGAGTGCCTGGCCGACCAAGGAGTCGAGATGGGCCGCCGAGGGCCCACGGAAGTAC
ATGGCGTTCATCTCCGCGCATACAACCAGGACACGCGCGCCATGGTTGTTCTCTGCCAAGTCCTTGGCCACGCGTAGCACCGTGCCGCCAGCAAAGCAGC
CCTGCATGTACAACATGACACGCTTCACCGACGGATTGAGACCGAGCAACTTGACCAGCTGGTAGTCAAAGCTAGGCATGCCAACGCCGGTGGTGGTGCA
AAACACGAGGTGGGATATCTTGGACATTGGCTGGCCCCACTCCTTGATCGCCCTCTCCGAGGCCTTCTTCGCGAGCTTGGGGATCTCGTTGCATAGGATA
GCCCGACGTGCGTTAAACGATGGCGCCATGAACTCGGCCATGTTTGGGTTCTCTTGGATATATTCTTCTGTCAGGTGCATGTACCTCTTCCGGATCATCG
TTCCGTC