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Detailed information on CNT30252423


BLAST search results

BLAST vs Swiss-Prot:
sp|Q03033|EF1A_WHEAT, E-value = 8e-79

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673325Avena sativaSetaria viridis81.4271.6986.67390forward

Expression of CNT30252423

Peptides detected in this lncRNA

>peptide 1 (91 aa)
WHSLQHGLVVHLHRLHLSGQPSWAKSDKHARLDHSSLNTPHWHSSNATNLVDILKGKAEGLDHSSLNTPHWHSSNATNLVDILKGKAEGLV*

>peptide 2 (50 aa)
GTASSMDSWCISTDFTSVVSPVGPKVTSMPGLITPVSTRPTGTVPMPPIL*

Sequence

>CNT30252423
CTGGCACAGCCTCCAGCATGGACTCGTGGTGCATCTCCACAGACTTCACCTCAGTGGTCAGCCCAGTTGGGCCAAAAGTGACAAGCATGCCAGGCTTGAT
CACTCCAGTCTCAACACGCCCCACTGGCACAGTTCCAATGCCACCAATCTTGTAGACATCCTGAAGGGGAAGGCGGAGGGGCTTGATCACTCCAGTCTCA
ACACGCCCCACTGGCACAGTTCCAATGCCACCAATCTTGTAGACATCCTGAAGGGGAAGGCGGAGGGGCTTGTCTGAGGGCCTCTTGGGCTCATTGATCT
GGTCAAGCGCCTCAAGCAAGGTTGGGCCCTTGTACCAATCAAGGTTGCTGGACCTCTCAATCATGTTGTCACCCTCGAAACCTGAGATGGGGACAAATGG
GACCTTGTCAGGGTTGTAGCCCACCTTCTTCAAGTAGGAGCCAACTTCCTTGACAATTTCTTCAAAACGGCCCTTGGAG