CANTATAdb - search

Detailed information on CNT30252403

BLAST search results

BLAST vs Swiss-Prot:
sp|Q76H85|H4_SILLA, E-value = 2e-51

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30178072	Avena sativa	Secale cereale	45.41	57.56	94.55	312	forward
CNT30283256	Avena sativa	Triticum aestivum	45.41	59.66	95.83	312	forward
CNT30382783	Avena sativa	Triticum turgidum	44.83	55.1	95.45	308	forward
CNT30435210	Avena sativa	Aegilops tauschii	45.41	49.13	94.55	312	forward
CNT30655816	Avena sativa	Triticum dicoccoides	44.83	48.43	95.45	308	forward

Expression of CNT30252403

Peptides detected in this lncRNA

>peptide 1 (77 aa)
MRPEMRLTPPLRARRRIAGLVMPWMLSRSTFRWRLAPPLPSPLPPLPLPDISAPLLCCLALEVEGWIWGFLLEGNGS*

>peptide 2 (40 aa)
KHKHPHRLLLSFIGFVVQSKRKETELKNTTVVDTNLQVDR*

Sequence

>CNT30252403
CAAGCACAAACATCCGCACAGGTTACTACTTAGTTTCATTGGTTTTGTGGTACAGTCTAAAAGGAAAGAGACTGAGTTAAAAAATACTACAGTAGTAGAC
ACGAATCTGCAAGTGGACAGATAGAGAATATTCGAACGGATATAAAATTCAGAAATCGAATTAGAAGCTGCGATTGGATTGATGAAATTGAGAAGGGGAA
ATCTCGGTAGCATTTCTTCATATCCATAGCAAGCATTACATTAAACCACGAACACTCAGATCCACAAACCACATAAGCCTATCTCTCTAGCCGCCGAAGC
CGTACAGGGTGCGCCCCTGGCGCTTGAGTGCGTACACGACGTCCATGGCGGTGACGGTCTTGCGGCGGGCGTGCTCGGTGTAGGTGACTGCGTCGCGGAT
GACGTTCTCGAGGAAGATCTTGAGCACGCCGCGGGTCTCCTCGTAGATGAGGCCGGAGATGCGCTTGACGCCGCCCCTCCGCGCGAGACGACGGATCGCC
GGCTTGGTGATGCCCTGGATGTTGTCGCGCAGCACCTTCCGGTGGCGCTTGGCGCCGCCCTTGCCGAGCCCCTTGCCGCCCTTGCCCCTCCCGGACATCT
CCGCGCCGCTGCTCTGCTGCCTCGCTCTCGAGGTAGAAGGATGGATTTGGGGATTTTTGCTGGAAGGGAACGGGAGTTGATTGCTGT