Detailed information on CNT30252286


BLAST search results

BLAST vs Swiss-Prot:
sp|Q7Y0F2|NRX12_ORYSJ, E-value = 2e-76

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691718Avena sativaOryza sativa38.2720.7484.52168forward
CNT30132362Avena sativaLolium perenne99.3241.3792.66436forward
CNT30361378Avena sativaSorghum bicolor46.751.2586.34205forward
CNT30100808Avena sativaOryza rufipogon91.5779.9281.59402forward

Expression of CNT30252286

Peptides detected in this lncRNA

>peptide 1 (30 aa)
GVPRTLWIVWLSLAAFSCSFNSLILSGVKG*

>peptide 2 (32 aa)
MCGMPLTSNRSSRPLRPSESEKGTANHGIFAK*

>peptide 3 (99 aa)
RTKNTMDSLVILSCLFLFFQFTDPFRCKRISFCAIFTYKLDSISSKNFTSFSIKDNNVWNATDIEPLIKAFTAFRVRERDCQPRHLCKVSTECFLILIA*

Sequence

>CNT30252286
GGCGTACCAAGAACACTATGGATAGTTTGGTTATCCTTAGCTGCCTTTTCTTGTTCTTTCAATTCACTGATCCTTTCAGGTGTAAAAGGATAAGCTTCTG
TGCCATATTCACTTACAAACTCGACTCCATCTCCAGTAAGAACTTCACCAGTTTTAGCATCAAGGATAACAATGTGTGGAATGCCACTGACATCGAACCG
CTCATCAAGGCCTTTACGGCCTTCAGAGTCAGAGAAAGGGACTGCCAACCACGGCATCTTTGCAAAGTAAGCACTGAATGCTTCCTCATCCTGATCGCCT
GAAACAAAAACGACCTCAAAGCTCTTGCCATTTGAGGCAAGTTCTTTGTACATTTCAATAAGCTTTGGCGTGAACCGCCTGCATGGTGGGCACCATGAGG
CCGAGAAGTAGAGGGCCACAATGCCTCCCTCAATGCTGC