CANTATAdb - search

Detailed information on CNT30252262

BLAST search results

BLAST vs Swiss-Prot:
sp|P56319|PSBD_CHLVU, E-value = 4e-105

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30236148	Avena sativa	Brassica oleracea	94.06	37.11	91.23	570	forward
CNT30175943	Avena sativa	Vigna angularis	50.66	12.57	90.88	307	forward

Expression of CNT30252262

Peptides detected in this lncRNA

>peptide 1 (45 aa)
MKWVQRPIMKSLEEKDESKYRCYPKTRRKEPTRLPQWINKEYRNKN

Sequence

>CNT30252262
ATTAAAGAGCGTTTCCACGTGGTAGAACCTCCTCAAGGAATATAAGATTTTCATGAGGCTGATCCTGAGCTGCCATCCAAGCACGAATACCCTCATTTAA
AAGAATATTTTTGGTGTAGAAAGTCTCAATTCAGGATCTTCCGCTGCACGGATTTCCTGGGAAACAAAGTCATAGGCACGTAAGTTCAGAGCCAGGCCAA
CTACGCCAATAGCACTCATCCATAAACCGGTGACGGGTACAAATAGCATAAAGAAATGTAACCAACGTTTATTGGAAAAAGCAACACCAAAGATTTGGGA
CCAAAAGCGGTTAGCAGTAACCATTGAATAAGTTTCTTCAGCTTGAGTTGGGTTAAAAGCACGGAAGGTATTTGCACCATCACCGTCCTCAAATAAAGTG
TTTTCTACAGTCGCTCCATGAATAGCGCATAGCAGAGCCGCACCTAATACTCCGGCAACTCCCATCATATGAAATGGGTTCAACGTCCAATTATGAAATC
CTTGGAAGAAAAGGATGAATCGAAATATCGCTGCTACCCCAAAACTCGGCGCAAAGAACCAACCAGATTGCCCCAGTGGATAAATAAGGAATACAGAAAC
AAAAAC