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Detailed information on CNT30252253


BLAST search results

BLAST vs Swiss-Prot:
sp|O04023|SRC2_ARATH, E-value = 5e-11

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30680887Avena sativaTriticum urartu8.724.8385.9271forward

Expression of CNT30252253

Peptides detected in this lncRNA

>peptide 1 (78 aa)
MWRRVALPRRRLVSVCRDERRHHGTETVRHLERAAVPGALHLSDLVRRALPFRGRSRRRRRAARREGCTPRRRRGRQS*

>peptide 2 (44 aa)
MPGAVAVGLGLLERARVAADGPEGVHLHAAEHVHILQVVSRHER*

Sequence

>CNT30252253
TGAATCTGATGGTTTTATTCAAGCTCCACGTATACATATGTATCCTGAATTCCTGTTGAACATTTCCTAGTATTCTTTTATACGGCAATCCCTCCGGCGT
TGGCTGGCGCGGTTCCGTGTCCGGCATCCTCGTAAGCCGATTTGTCCGACGACGGCATAGCCCCGAAGCCTCCACCGAGCCCCAGTGCGAAGCTGCTGTT
CTTCCGAATATACTTCGTCCCCGCCTGGTACCTCGTCGGGTAAGCATGTGGCGGAGGGTAGCACTGCCACGGCGGCGGCTGGTAAGCGTTTGCCGGGACG
AGCGGCGCCATCACGGGACCGAAACGGTACGCCACCTTGAGCGTGCCGCGGTGCCCGGCGCATTGCACCTTTCGGACCTGGTACGACGCGCGCTGCCATT
CCGTGGCCGGAGTCGCAGGCGCCGGCGAGCAGCTCGGCGAGAGGGATGTACACCTCGCCGACGTCGCGGTCGCCAAAGCTGAAGAGGCGCTCGGTGCGGA
GGAGCACGTGGAGGCAGGCGCCGGAGCCGTAGGCCGCGGCGGCCGTGGGCGGGACGGCGAACCAGAAGGTGTCGTCCGAGTCCCACGTCGGATGCCTGGC
GCCGTCGCGGTCGGTCTTGGTCTTCTGGAGCGTGCGAGGGTCGCCGCAGACGGACCCGAGGGCGTACACCTCCATGCGGCTGAACACGTTCACATCCTTC
AGGTTGTGAGCCGACACGAGCGATAGCGCCACTACCCTGTGCGCCATTGCTAATTAACACTGCTTCAGCTCAGGCGATCGGAGGCAGCTACGTGGTTGGC
TCTAGCTGCATGCTGC