CANTATAdb - search

Detailed information on CNT30252143

BLAST search results

BLAST vs Swiss-Prot:
sp|Q76H85|H4_SILLA, E-value = 6e-50

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30186872	Avena sativa	Secale cereale	30.66	63.53	96.53	317	forward
CNT30299936	Avena sativa	Triticum aestivum	34.53	65.38	93.28	357	forward
CNT30219776	Avena sativa	Hordeum vulgare	22.82	56.06	96.19	236	forward
CNT30394717	Avena sativa	Triticum turgidum	34.53	70.83	93.28	357	forward
CNT30441099	Avena sativa	Aegilops tauschii	33.85	67.83	95.71	350	forward
CNT30664208	Avena sativa	Triticum dicoccoides	29.88	61.43	95.79	309	forward
CNT3059678	Avena sativa	Arabidopsis lyrata	15.86	34.1	83.54	164	forward
CNT30450127	Avena sativa	Saccharum spontaneum	30.37	47.01	95.86	314	forward
CNT30139599	Avena sativa	Lolium perenne	29.69	64.23	95.11	307	forward
CNT30687044	Avena sativa	Triticum urartu	29.79	30.23	94.81	308	forward
CNT30645456	Avena sativa	Cannabis sativa	24.56	33.12	84.65	254	forward
CNT30147953	Avena sativa	Brachypodium distachyon	29.5	35.1	95.74	305	forward

Expression of CNT30252143

Peptides detected in this lncRNA

>peptide 1 (47 aa)
SRTRGSDHPSTHPNMNRTQRETTSKGDSEAEYTTPTVQTQRQLDITN*

>peptide 2 (77 aa)
MSPEMRFTPPRRARRRIAGLVMPWMLSRSTFRCRFAPPLPRPLPPLPRPDIFASLRFSGEVDLSVCGGWCGDGWWWCR

Sequence

>CNT30252143
CAGCCGAACCAGAGGTTCGGATCATCCTAGTACACATCCAAACATGAACAGGACACAACGGGAAACAACATCAAAAGGCGATTCAGAGGCAGAGTACACT
ACTCCTACAGTTCAGACTCAGAGGCAGCTGGATATAACAAACTGATCCACGGGAACTGCAGAAACGAAAGGCGAGCTGTAACAACAAGCTGAAATCAACA
CCAGCAGAGCAAGAGATTGCAGGTCAATTCAAGGATTACCTAGTAGTGAAATTCCCATTCCATTCTGCCAAACCAGTACAGAGAAGATTGGACAACACGC
GATTGGTTCGGGGGCAATTCGACAGAAACTATATATTGGTGAATTGCTGAACGAACAGGTGAACTGTAACAAATTTGCACAAATCAACATCGACAGAAGC
AGAGATTGCAAAAAAAAACAAGGAAGATATTCTAGCGAAATTCCCATTCCATTCTGCCGAACCAGAGGTTCAGCTCATCATCCTAGTACAACATCCAAAC
ATGAACAAGACACAACAGCAGGAGACAACATCAAGACACACAGCTACCACACCAACGACACACGAACCCTAACGAACAACAACAGCAACATTCGCTAACT
TCTTCCATCCCTGAAGATTCCGCGCTCGGTCGCCTTCCCTAACCTCCGAATCCGTAGAGGGTGCGTCCCTGGCGCTTGAGCGCGTAGACGACGTCCATGG
CGGTGACGGTCTTGCGGCGGGCGTGCTCGGTGTAGGTGACGGCGTCGCGGATGACGTTCTCGAGGAAGATCTTGAGCACGCCGCGGGTCTCCTCGTAGAT
GAGCCCCGAGATGCGCTTCACGCCGCCGCGGCGCGCCAGGCGCCGGATCGCCGGCTTGGTGATGCCCTGGATGTTGTCGCGGAGCACCTTCCGGTGCCGC
TTCGCGCCGCCCTTGCCCAGACCCTTGCCTCCCTTGCCGCGGCCTGACATCTTCGCTTCGCTTCGCTTCTCCGGTGAGGTTGACTTGTCTGTGTGCGGTG
GTTGGTGCGGAGATGGGTGGTGGTGGTGCCGTGT