Detailed information on CNT30252135


BLAST search results

BLAST vs Swiss-Prot:
sp|Q40004|RBS_HORVU, E-value = 6e-84

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30288709Avena sativaTriticum aestivum43.5643.3692.08379forward
CNT30221752Avena sativaHordeum vulgare44.4857.8591.47387forward
CNT30386685Avena sativaTriticum turgidum44.0231.8991.64383forward
CNT30136970Avena sativaLolium perenne44.660.7292.53388forward
CNT30721860Avena sativaTriticum spelta42.0763.7690.16366forward
CNT30556975Avena sativaPanicum hallii41.1544.8182.68358forward
CNT30551876Avena sativaOryza brachyantha39.8940.3586.74347forward

Expression of CNT30252135

Peptides detected in this lncRNA

>peptide 1 (54 aa)
MHLILPPLLTLPRPALLRRLTGRPAVDLRPWKGATEVADEAITVGAMVLEESSRQ

>peptide 2 (33 aa)
MKPTLLNSRQGTHLERIKKSICFRRASSESGGR*

>peptide 3 (80 aa)
MTLRTLSAKYIGLKRKLIGIVQKYPYLHAPDPSAVADAAEAGIAAAADGEASGGLEALEGRNGGGRRSHHGGSHGIGGEQ*

>peptide 4 (75 aa)
MQNKPWSRVSRQKYIFHIAAVVSGGSLCLSGLLAAWWLEGDEADALHLTDVVEADDADIGVRVLLLDLLHLLDDL*

Sequence

>CNT30252135
CTCGGCTGATTGCATATAAATACACTCGGAAATAATATATATGTGTATGTGCTTATGTGTGTAGCCGGTTCTAGAATTCACATATGAGCTCTCTTCACCC
TAGGTTGGTAGGTACATAGATACAAGCATACGTACATACACAATCATACTGAATGCAAAACAAACCCTGGAGCAGAGTCAGTCGGCAAAAGTATATATTT
CATATAGCGGCCGTTGTTTCAGGTGGCAGCTTATGCCTTTCCGGACTCCTCGCAGCCTGGTGGCTTGAAGGCGATGAAGCTGACGCACTGCACCTGACGG
ATGTTGTCGAAGCCGATGATGCGGACATAGGCGTCAGGGTACTCCTTCTTGACCTCCTCCACCTCCTTGATGACCTGTGAAGCGTCGGTGCAGCCGAACA
TGGGCAGCTTCCACATTGTCCAGTACCTGCCGTCGTAGTACCCGGGGGTGCTGCCGTGCTCGCGGAAGATGAAGCCAACCTTGCTGAACTCGAGGCAGGG
AACCCACTTGGAGCGGATCAAGAAGTCGATCTGCTTCAGGAGGGCCTCCTCGGAGAGTGGTGGCAGGTAAGACAGGGTCTCGAACTTCTTGATGCCCTCA
ATTGGCCACACCTGAATTGTTGATGACACTTAGGACACTTAGCGCCAAGTACATTGGATTGAAAAGAAAACTCATAGGTATCGTTCAGAAATATCCATAC
CTGCATGCACCTGATCCTTCCGCCGTTGCTGACGCTGCCGAGGCCGGCATTGCTGCGGCGGCTGACGGGGAGGCCAGCGGTGGACTTGAGGCCCTGGAAG
GGCGCAACGGAGGTGGCCGACGAAGCCATCACGGTGGGAGCCATGGTATTGGAGGAGAGCAGTAGGCAGG