Detailed information on CNT30252036


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SBL5|CHS4_SORBI, E-value = 3e-169

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30192533Avena sativaSecale cereale13.732.7881.28219forward
CNT30466546Avena sativaSaccharum spontaneum13.0778.5784.21209forward
CNT30680228Avena sativaTriticum urartu7.525.4284.17120forward
CNT30365392Avena sativaSorghum bicolor14.6340.3482.91234forward
CNT30103826Avena sativaOryza rufipogon9.4421.8585.43151forward

Expression of CNT30252036

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MPHKNRPIHISKCLKLKFFFETMLFKEHFVSKQG*

>peptide 2 (55 aa)
MPSCAECLRISSKMKRTQALDMLPYSERMCRVALIRFLSRQASASTMSRMAAPPG*

>peptide 3 (85 aa)
MPMPVVVQNTRWDILDIGWPHSLIALSEAVFASFGISSLRMARRAANDGAMNSAMFGFSWIYSSVRCMYLFRIIVPSPARNYRIH*

>peptide 4 (48 aa)
MKLSGVAVPMASTVAGPSALCAAGNSITSLASYLGLGVCMMLEYVETAT

>peptide 5 (54 aa)
MEFQSVMPIGAKAATSALKMFFEMTTGTSLLSCKVSPPSRRSPTMKPSVSGNMV*

>peptide 6 (36 aa)
SVYPLHLDRNFSFINKIQNSILLTLKMHHITLCSLL*

>peptide 7 (89 aa)
MGTSGSAPTMSAAAPSPKSAWPTKESRWAAEGPRKYMAFISAHTTRTRAPRLFSARSLATRNTVPPAKQPCMYNMTRFTDGLRPSNLTS*

Sequence

>CNT30252036
ATCAGTTTATCCATTACATTTAGATCGTAATTTCTCTTTTATTAATAAGATACAAAATTCCATTCTATTAACACTTAAAATGCATCATATAACACTTTGC
TCATTATTGTAGTAGAGCGTTTGTATTGCATCTAGTTCTTCGTTGGTGTTGCATGTAGTAGATCCACGTGGAACTGCGATAGCAGCTGGTGGCTCATGGG
GCGGCGACAGGGACACTGCGGAGCACGACGGTCTCGACGGTAAGGCCAGGTCCAAAGCCGAACAACACGCCCCAGTCCTTGCCCTCGCCAGTAGTGGCCA
TGCCTTCCTGTGCAGAGTGCTTACGGATCTCATCCAAGATGAAGAGGACGCAAGCGCTGGACATGTTACCATACTCGGAGAGGATGTGCCGGGTGGCTCT
CATCCGCTTCTTGTCGAGACAGGCCTCAGCCTCCACCATGTCTAGGATGGCCGCTCCGCCAGGGTGAGCCACCCAGAAGATGGAGTTCCAGTCGGTGATG
CCCATCGGTGCAAAGGCGGCCACCAGTGCGCTCAAAATGTTCTTCGAGATGACCACGGGCACGTCTCTGTTGAGTTGTAAGGTGAGCCCCCCATCCAGGA
GATCACCCACGATGAAACCATCCGTGTCTGGCAATATGGTCTGACTCGTTGACATTACTTGGAACAGAGGCCTCTCCATGGGAACCTCAGGGTCGGCACC
AACGATGAGCGCGGCGGCCCCATCACCGAAGAGTGCCTGGCCAACCAAGGAGTCAAGATGGGCCGCTGAGGGCCCACGGAAGTACATGGCGTTCATCTCT
GCACACACAACTAGGACACGCGCGCCACGGTTGTTCTCTGCTAGGTCCTTGGCCACGCGCAACACCGTGCCGCCGGCGAAGCAGCCCTGCATGTACAACA
TGACGCGCTTCACCGATGGGCTGAGGCCGAGCAACTTGACCAGCTGATAGTCGGCGCTGGGCATGCCAATGCCGGTGGTGGTGCAGAACACGAGGTGGGA
TATCTTGGACATTGGCTGGCCCCACTCCTTGATCGCCCTCTCTGAGGCCGTCTTCGCGAGCTTCGGGATCTCATCGCTTAGGATGGCCCGACGCGCGGCA
AACGACGGCGCCATGAACTCCGCCATGTTTGGGTTCTCTTGGATATATTCTTCTGTCAGGTGCATGTACCTCTTCCGAATCATCGTCCCGTCGCCTGCAC
GTAATTACCGGATTCATTAGTTAGTCATACTGATAGTCATGCCACACAAAAACCGGCCAATACACATATCAAAGTGTTTAAAACTGAAGTTTTTTTTTGA
AACCATGCTATTTAAAGAGCACTTTGTATCCAAACAGGGCTAAGAATCAGGAAACTTTACGTACACATCCGCTTGAACTTGCGCTTGAGATCGACGAGAT
GCTCGCTCTTGGTGACTCGGAAGTAATAGTCGGGGTAGTCCGCCTGGTACATGAAGTTATCCGGCGTCGCGGTGCCGATGGCTAGCACCGTCGCCGGCCC
CTCGGCCCTCTGCGCTGCTGGCAACTCCATCACCTCCCTAGCTAGCTACCTGGGTCTGGGTGTGTGTATGATGCTTGAATATGTCGAAACTGCTACGGC