Detailed information on CNT30251998


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694940Avena sativaOryza sativa31.2530.9387.7890forward
CNT30672185Avena sativaSetaria viridis51.7427.2487.92149forward
CNT30520486Avena sativaSetaria italica51.7428.3387.92149forward
CNT30221871Avena sativaHordeum vulgare42.7153.4891.87123forward
CNT30436523Avena sativaAegilops tauschii30.5613.3196.5988forward
CNT30659470Avena sativaTriticum dicoccoides65.6282.1792.06189forward
CNT30450016Avena sativaSaccharum spontaneum51.7413.4889.26149forward
CNT30680442Avena sativaTriticum urartu51.3962.7193.24148forward
CNT30352666Avena sativaEragrostis tef47.5716.9389.78137forward
CNT30362862Avena sativaSorghum bicolor51.7429.3989.93149forward
CNT30370761Avena sativaOryza glumipatula50.3514.6286.9145forward
CNT30147603Avena sativaBrachypodium distachyon37.8536.5888.07109forward
CNT30100764Avena sativaOryza rufipogon32.6434.8189.3694forward
CNT30496353Avena sativaDigitaria exilis51.7413.0288.59149forward

Expression of CNT30251998

Peptides detected in this lncRNA

>peptide 1 (47 aa)
LPVCSCRGRAVPAGGAREASRRGRQRRGGPRRAAAGGTSGRGTRRWS*

>peptide 2 (29 aa)
MNMGASGFSDDAADIDMVLIISSGQPLLRI

>peptide 3 (94 aa)
CRFVVVEVGLCLLVGRGRRVEEVVSVEEVLVELLLAEPVVAEPGGGLDELVPLGRVVLDAPERRRDEHGRVRVQRRRRRHRHGAHHILRSTTAAD

Sequence

>CNT30251998
CCTGCCGGTTTGTAGTTGTAGAGGTCGGGCTGTGCCTGCTGGTGGGGCGAGGGAGGCGAGTAGAAGAGGTCGTCAGCGTCGAGGAGGTCCTCGTAGAGCT
GCTGCTGGCGGAACCAGTGGTCGCGGAACCAGGCGGTGGTCTTGACGAGCTCGTACCACTCGGGCGAGTAGTCCTCGACGCGCCTGAACGCCGCCGGGAT
GAACATGGGCGCGTCCGGGTTCAGCGACGACGCCGCCGACATCGACATGGTGCTCATCATATCCTCCGGTCAACCACTGCTGCGGATA