Detailed information on CNT3025196


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CH33|UBQ11_ARATH, E-value = 3e-103

BLAST vs NONCODE:
NONMTRT002043, E-value = 6e-56

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30500449Populus trichocarpaCoffea canephora65.329.3886.33461forward
CNT30381257Populus trichocarpaManihot esculenta65.367.285.68461forward
CNT30628664Populus trichocarpaVigna unguiculata66.0139.1986.7466forward
CNT30171188Populus trichocarpaTrifolium pratense65.8629.6987.31465forward
CNT30620158Populus trichocarpaCajanus cajan65.8666.0585.38465forward

Expression of CNT3025196

Peptides detected in this lncRNA

>peptide 1 (53 aa)
MRKLKNHHGDGGQGEGWTPSGYCSLLGCVHLPTAFRQRSTFVGQGVFLPCPGS*

>peptide 2 (48 aa)
TKAHMNKLKFICLNTKACNGTALNSQSKQYQTGRKHQLQKSTVIIYLK*

>peptide 3 (40 aa)
MVSELSTSRVMVFPVRVLTKICMPPLKRSTKWRVDSFWML*

Sequence

>CNT3025196
AACAAAAGCGCATATGAATAAACTAAAATTTATTTGCTTAAATACGAAAGCTTGCAATGGAACGGCCCTTAACAGCCAATCCAAACAGTACCAAACTGGA
CGCAAACACCAACTTCAAAAGAGTACAGTAATAATTTATTTAAAGTAGCCATTCGAAAATGGCTACTGAGCACACACAAGAGCCCCACGAGGCATAAAAC
ACCCAAGACAACATGCGGAAGCTTAAAAACCACCACGGAGACGGAGGACAAGGTGAAGGGTGGACTCCTTCTGGATATTGTAGTCTGCTAGGGTGCGTCC
ATCTTCCAACTGCTTTCCGGCAAAGATCAACCTTTGTTGGTCAGGGGGTATTCCTTCCTTGTCCTGGATCTTAGCCTTGACATTGTCAATGGTGTCTGAG
CTCTCCACCTCCAGGGTGATGGTCTTTCCAGTAAGGGTCTTAACAAAGATTTGCATGCCACCTCTCAAACGGAGCACCAAGTGGAGGGTGGACTCCTTCT
GGATGTTGTAATCAGCAAGGGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAAAATCAGCCTCTGCTGGTCTGGTGGGATTCCCTCCTTGTCCTGGATCTT
GGCCTTAACATTATCAATAGTGTCTGAGCTTTCCACCTCAAGGGTGATGGTCTTGCCAGTAAGAGTCTTGACGAAGATTTGCATCTGACACCCCAAAAAA
GTAAAA