CANTATAdb - search

Detailed information on CNT30251938

BLAST search results

BLAST vs Swiss-Prot:
sp|P09755|CB22_SOYBN, E-value = 4e-49

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30696173	Avena sativa	Oryza sativa	53.22	51.72	90.02	421	forward
CNT30187536	Avena sativa	Secale cereale	70.92	64.48	93.23	561	forward
CNT30301046	Avena sativa	Triticum aestivum	68.39	65.42	93.53	541	forward
CNT30393967	Avena sativa	Triticum turgidum	46.52	61.33	94.84	368	forward
CNT30554920	Avena sativa	Oryza glaberrima	53.35	57.26	90.28	422	forward
CNT30665949	Avena sativa	Triticum dicoccoides	70.42	65.53	93.9	557	forward
CNT30473044	Avena sativa	Saccharum spontaneum	61.57	55.28	90.76	487	forward
CNT30129613	Avena sativa	Corymbia citriodora	53.86	58.2	90.14	426	forward
CNT30685781	Avena sativa	Triticum urartu	58.03	52.64	93.9	459	forward
CNT30369202	Avena sativa	Oryza glumipatula	44.63	39.62	92.63	353	forward
CNT30108138	Avena sativa	Oryza longistaminata	53.6	52.35	92.22	424	forward
CNT30103236	Avena sativa	Oryza rufipogon	60.94	48.83	90.66	482	forward
CNT30574663	Avena sativa	Oryza barthii	60.81	58.44	90.64	481	forward
CNT30115779	Avena sativa	Oryza nivara	42.86	64.57	92.63	339	forward
CNT30603587	Avena sativa	Oryza punctata	42.73	66.54	92.6	338	forward

Expression of CNT30251938

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MVMRPSPKGEALEAFTGVPAIAGEESAMVEAAIAR*

>peptide 2 (74 aa)
MAWTKNPNMENMARRPFLSSLTLSSAKASGSSASSSGKTQPRAPSMAQREWMTSSSRFLAKVSGSAERPAVSQP*

Sequence

>CNT30251938
TAAACACCATGATCTTTAGTGTACAACACCAACTCCTCATCTCGACTCGCCTTAACATGATCTATCAGTGACGACACACACATGCAGCAGCAGCAGCATT
CAGCAATGAAGTGGTCGGCCAAGCGCGCGCACGACGCAGCACACGCTAGAGGTTGAGCTTACTAATAAGCTCTTACTTGCCGGGGACGAAGTTGGTGGCG
AAGGCCCATGCGTTGTTGTTGACGGGGTCGGCGAGGTGGTCGGCGAGGTTCTCGAGGGGGCCCTTGCCGGTGACGATGGCCTGGACGAAGAATCCGAACA
TGGAGAACATGGCGAGGCGTCCGTTCTTGAGCTCCTTGACCTTGAGCTCGGCGAAGGCCTCCGGGTCGTCGGCGAGCAGCTCGGGGAAGACGCAGCCGAG
GGCGCCGAGCATGGCCCAGCGGGAGTGGATGACCTCGAGCTCGCGGTTCTTGGCGAAGGTCTCGGGGTCGGCGGAGAGGCCGGCGGTGTCCCAGCCGTAG
TCGCCGGGGAACTCGCCGGTGAGGTAGCTGGGGGGCTCGCCGGAGAGCGGGCCGAGGTAGAGCACGCGGTCGGAGCCGTACCAGGGGCTGCCGGACGCGG
ACACCTTGGGCTTGGCGGCCGTCTTGCGCATGGTGATGCGGCCCTCGCCGAAGGGGGAGGCCCTGGAGGCCTTCACGGGGGTGCCGGCCATCGCCGGGGA
GGAGAGCGCCATGGTGGAGGCTGCCATTGCTCGCTAGTCTGAGGTGAGGTGCTTCGAGTGAGCTCTCAGGTAGTAGTAGTAGATGGTGGTG