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Detailed information on CNT30251924


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6Z4N4|40G3_ORYSJ, E-value = 2e-75

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694973Avena sativaOryza sativa43.3828.0693.22236forward
CNT30671534Avena sativaSetaria viridis65.9946.6289.97359forward
CNT30520246Avena sativaSetaria italica50.7429.3688.77276forward
CNT30180108Avena sativaSecale cereale37.593.1593.14204forward
CNT30289434Avena sativaTriticum aestivum43.3840.7699.15236forward
CNT30221546Avena sativaHordeum vulgare37.6889.9193.66205forward
CNT30386449Avena sativaTriticum turgidum22.2424.4997.52121forward
CNT30554471Avena sativaOryza glaberrima43.3842.8393.22236forward
CNT30436341Avena sativaAegilops tauschii33.6460.296.17183forward
CNT30658643Avena sativaTriticum dicoccoides43.253.0593.19235forward
CNT30450022Avena sativaSaccharum spontaneum65.9934.7290.53359forward
CNT30680880Avena sativaTriticum urartu43.245.4593.19235forward
CNT30340854Avena sativaEragrostis tef25.9261.8495.74141forward
CNT30361377Avena sativaSorghum bicolor63.4230.6489.86345forward
CNT30596591Avena sativaOryza meridionalis43.249.8991.06235forward
CNT30370660Avena sativaOryza glumipatula43.3841.1193.22236forward
CNT30102628Avena sativaOryza rufipogon43.3818.693.22236forward
CNT30577143Avena sativaOryza barthii43.3846.5593.22236forward
CNT30496422Avena sativaDigitaria exilis41.9136.9591.23228forward
CNT30117165Avena sativaOryza nivara42.151.1293.01229forward
CNT30604388Avena sativaOryza punctata28.6846.9994.87156forward
CNT30556802Avena sativaPanicum hallii54.633.692.59297forward
CNT30551356Avena sativaOryza brachyantha28.8645.3893.63157forward

Expression of CNT30251924

Peptides detected in this lncRNA

>peptide 1 (30 aa)
LYIQVQSQQLMHTSVHERLSSDHRPLFYDV*

>peptide 2 (76 aa)
MLFTMRTQRKPLPTSRLSVHSTDSSWYAGLYGTSFTGCPCPVECLMHSPVTLFTIANAGYPSSSLILLPCLMSLIQC

>peptide 3 (33 aa)
YIFRYNHNSLCIHPYTSACHLTTGLYSTMCSEG*

>peptide 4 (63 aa)
MKLTIRDSARRSSVGTDVPSWVWLAGLALSSMAGSSSAGCRPRTTSRARPRCRRGRRRGTCRR*

Sequence

>CNT30251924
TTTATATATTCAGGTACAATCACAACAGCTTATGCATACATCCGTACACGAGCGCTTGTCATCTGACCACCGGCCTTTATTCTACGATGTGTAGCGAGGG
ATGAAGTTGACTATCCGGGACAGTGCACGTCGCTCTTCAGTAGGTACGGATGTACCAAGTTGGGTATGGCTGGCCGGCTTAGCACTCAGTAGTATGGCTG
GATCTTCCAGCGCTGGTTGTCGCCCTCGCACCACTTCCAGAGCACGACCTCGGTGCCGTCGCGGACGCCGCCGTGGTACTTGTCGCCGTTGAGGGCGTCG
AAGTTGAGGTAGATGTTGTTCACCATGCGCACGCAGCGGAAGCCCTTGCCCACGTCGCGGCTCTCCGTCCACAGCACCGACTCGTCCTGGTACGCCGGGT
TGTACGGCACCAGCTTCACCGGGTGCCCCTGCCCGGTCGAGTGCTTGATGCACTCGCCGGTCACCTTGTTCACGATCGCGAACGCGGGGTACCCTTCCTC
GTCCCTGATCTTGTTGCCGTGCCTCATGTCCTTGATCCAGTGCT