Detailed information on CNT30251850


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SBL5|CHS4_SORBI, E-value = 2e-159

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3088050Avena sativaVigna radiata15.5341.4378.85208forward

Expression of CNT30251850

Peptides detected in this lncRNA

>peptide 1 (86 aa)
MEFQSVMPIGSKAATSALKMFFEMTTGTSLLSCKVSPPSSRSPTMKPSVSGSMVWLVDTTWNRGLSMGTSGSAPTISAAAPSPKSA*

>peptide 2 (29 aa)
MASTVAGPSGLCAAGNSITSLATWVWVCV*

>peptide 3 (80 aa)
MFRRGPTEVHGVHLRADNEDTCVTVVLRQVLGHTQHRAASEAALHVQHDALHRWAEAEQLDQLVVGAGHANAGGGAKHKV*

>peptide 4 (57 aa)
KPNNTPQSLPSPVVAMPSCAECLRISSRMKRTHALDMLPYSERMCRVALIRFLSRQA*

>peptide 5 (85 aa)
MPTPVVVQNTRCDIFDIGWPHSLIALSEAVFASFGISSHRMARRAAKDGAMNSAMFGFSWIYSSVRCMYLFRIIVPSPARNYHIH*

>peptide 6 (54 aa)
MAFISAQTTRTRASRLFSARSLATRNTVPPAKQPCMYNMTRFTDGLRPSNLTSW*

Sequence

>CNT30251850
CAAAGCCGAACAACACGCCCCAGTCCTTGCCCTCGCCGGTAGTGGCCATGCCTTCCTGTGCAGAGTGCTTACGGATCTCATCTAGGATGAAGAGGACACA
CGCGCTGGACATGTTACCATACTCGGAGAGGATGTGCCGGGTGGCTCTCATCCGCTTCTTGTCGAGACAAGCCTGAGCCTCCACCATGTCTAGGATGGCC
GCTCCGCCGGGGTGAGCCACCCAGAAGATGGAGTTCCAGTCGGTGATGCCCATCGGCTCAAAGGCGGCCACCAGTGCGCTTAAAATGTTCTTCGAGATGA
CCACTGGCACGTCTCTATTGAGTTGTAAGGTGAGCCCCCCATCTAGTAGATCGCCCACGATGAAACCATCCGTGTCGGGCAGTATGGTCTGGCTCGTTGA
CACTACCTGGAACAGAGGCCTCTCCATGGGAACCTCAGGGTCGGCGCCAACGATCAGTGCGGCGGCCCCATCACCGAAGAGTGCCTGACCGACCAAGGAG
TCAAGATGTTCCGCCGAGGGCCCACGGAAGTACATGGCGTTCATCTCCGCGCAGACAACGAGGACACGTGCGTCACGGTTGTTCTCCGCCAGGTCCTTGG
CCACACGCAACACCGTGCCGCCAGCGAAGCAGCCTTGCATGTACAACATGACGCGCTTCACCGATGGGCTGAGGCCGAGCAACTTGACCAGCTGGTAGTC
GGCGCTGGGCATGCCAACGCCGGTGGTGGTGCAAAACACAAGGTGTGATATCTTCGACATTGGCTGGCCCCACTCCTTGATCGCCCTCTCTGAGGCCGTC
TTCGCGAGCTTCGGGATCTCGTCGCACAGGATGGCCCGACGTGCGGCAAAGGACGGCGCCATGAACTCCGCCATGTTTGGGTTCTCTTGGATATATTCTT
CTGTCAGGTGCATGTACCTCTTCCGAATCATCGTCCCGTCGCCTGCACGTAATTACCATATTCATTAGTTAGTCATACTGATAGTCATGCCACACAAAAA
CCGGCGAATACACATGTCAAAGTGTTTAAAACTGAAGTTTTTGTTGAAACCATACTATTAAAAGAACATTTTGTATCCAAACGGGGCTAAGAATCAGGAA
ACTTTACTTACACATCCGCTTGAACTTGCGCTTGAGATCGACGAGGTGCTCGCTCTTGGTCACTCGGAAGTAATAGTCCGGGTAGTCCGCCTGGTACACG
AAGTTATCCGGCGTCGCCGTGCCGATGGCTAGCACCGTCGCCGGCCCCTCGGGCCTCTGCGCTGCTGGCAACTCCATCACCTCCCTAGCTACCTGGGTTT
GGGTGTGTGTATGATGCGTGAATGTGTCGAAACTGCTAC