Detailed information on CNT3025185


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30549577Populus trichocarpaIpomoea triloba13.0421.7998.7278reverse complement
CNT30506280Populus trichocarpaNicotiana attenuata12.8826.196.177forward
CNT3067939Populus trichocarpaLeersia perrieri11.3723.6194.1268reverse complement
CNT30126894Populus trichocarpaCorymbia citriodora12.8821.3396.177forward
CNT30572709Populus trichocarpaVitis vinifera13.3827.0398.7580forward

Expression of CNT3025185

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MKLCYKMIKTAMNFYELFSTMVIEIFTRV*

>peptide 2 (29 aa)
MCIRECFILYGFKTASAFSILLALILCCI*

Sequence

>CNT3025185
CAAACATATTGGACAAGAATACCCCTCAACCGTGACTCTCAAACCCTAAAAACCCTGTGCCTATAAAATGCATAGAACCCCATCTTTCTCTCAAGAATTC
ACTCTCAAGGAATCTCATCCACTCTACATCGGCTAATTGAGAAAGAGATCTACAAGGAAACAGATACCTCTGATCCAGGATGAGAGCTAAGTGGAAGAAG
AAGCGTATGAGGAGGTTGAAGAGGAAGCGCAGAAAGATGAGGCAGAGATCCAAGTAGGCTGCGGGCTTGGACAAGATGGATCTTTTTTCTACTGGTACAT
GCCTATGATGCTTATGGCTTTGTGCTGCGTGAAGCTGTGGGGATGAGGGATGTGTATTAGGGAATGTTTCATCTTGTATGGTTTTAAGACTGCTTCTGCT
TTTAGTATTCTGTTGGCTTTAATTTTGTGTTGTATTTGACTTCTTTACTTTAATATATTGCTTATGGATGGATGAATGAAACTTTGTTATAAAATGATTA
AAACAGCAATGAACTTCTATGAATTGTTTTCCACAATGGTGATCGAGATTTTTACTAGAGTTTGAGCATGGTTTAGAGTCTTCGTGGCTGATTTTTTA