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Detailed information on CNT30251828


BLAST search results

BLAST vs Swiss-Prot:
sp|P26667|RBS2_WHEAT, E-value = 3e-71

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30287807Avena sativaTriticum aestivum57.0141.9987.71480forward
CNT30221104Avena sativaHordeum vulgare57.4839.6787.19484forward
CNT30385453Avena sativaTriticum turgidum57.0126.5287.08480forward
CNT30658331Avena sativaTriticum dicoccoides57.0168.6787.5480forward

Expression of CNT30251828

Peptides detected in this lncRNA

>peptide 1 (55 aa)
MHLILPPLLTLPRPALLRRLTGRPAVDLRPWNGATVVADEAITVGAIVLRTMLAC*

>peptide 2 (35 aa)
MTSDALHLTDVVEADDADIGVRVLLLDLLHLLDDL*

>peptide 3 (65 aa)
MTLRTLSAKYIGLKRKLIGIFQKYPYLHAPDPSAVADAAEAGIAAAADGEASGGLEALEWCDGGG*

>peptide 4 (33 aa)
MKPTLLNSRQGTHLERIKKSICFRRASSESGGR*

Sequence

>CNT30251828
ATGCCATGAGTAAAACCTTGGTATAATTGTATATATGTATATGCTGTTATTCCCTGCTCGGGCGCAGCTTATGCCTTTCCGGACTCCTCGCAACCCGGTG
GCTTGAAGGCGATGAAGCTGACGCACTGCACTTGACGGATGTTGTCGAAGCCGATGATGCGGACATAGGCGTCAGGGTACTCCTTCTTCACCTCCTCCAC
TTCCTTGATGACCTCTGACGCACTGCACTTGACGGATGTTGTCGAAGCCGATGATGCGGACATAGGCGTCAGGGTACTCCTTCTTGACCTCCTCCACCTC
CTTGATGACCTGTGAGGCGTCGGTGCAGCCGAACATGGGCAGCTTCCACATTGTCCAGTACCTGCCGTCGTAGTATCCGGGAGTGCTGCCGTACTCGCGG
AAGATGAAGCCAACCTTGCTGAACTCGAGGCAGGGAACCCACTTGGAGCGGATCAAGAAGTCGATCTGCTTCAGGAGGGCCTCCTCTGAGAGTGGTGGCA
GGTAAGACAGGGTCTCGAACTTCTTGATGCCCTCAATTGGCCACACCTGAATTGTTGATGACACTTAGGACACTTAGCGCCAAGTACATTGGATTGAAAA
GAAAACTCATAGGTATCTTTCAGAAATATCCATACCTGCATGCACCTGATCCTTCCGCCGTTGCTGACGCTGCCGAGGCCGGCATTGCTGCGGCGGCTGA
CGGGGAGGCCAGCGGTGGACTTGAGGCCTTGGAATGGTGCGACGGTGGTGGCTGACGAAGCCATCACCGTGGGGGCCATTGTATTACGTACTATGCTAGC
TTGCTAGCTCTATATGCTTTGCTATGAAGAGGAGGAGGCAGG