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Detailed information on CNT30251799


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9FKW8|STR18_ARATH, E-value = 3e-08

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30185762Avena sativaSecale cereale35.5622.6182.16213forward
CNT30303937Avena sativaTriticum aestivum31.7246.2386.84190forward
CNT30225212Avena sativaHordeum vulgare14.5221.9788.5187forward
CNT30397702Avena sativaTriticum turgidum36.7357.4485220forward

Expression of CNT30251799

Peptides detected in this lncRNA

>peptide 1 (66 aa)
ELPVLLIETGDGYAPDNKSVDDAWLLLMVSHSFQQGEVATLQVLHVLKALQNQNSKQIFSIEEHGL*

>peptide 2 (38 aa)
MKKRTASTRRRSFLAWSAATCSTKCGFRSGLPRGVTER*

Sequence

>CNT30251799
TCGAATTGCCCGTTCTTCTTATTGAGACTGGGGATGGATATGCTCCTGACAATAAATCAGTTGATGATGCCTGGTTGTTACTGATGGTAAGTCACAGTTT
TCAGCAGGGAGAGGTAGCCACCTTGCAGGTTCTTCACGTTCTTAAAGCCCTGCAAAACCAAAATTCGAAACAAATATTTTCAATCGAGGAACATGGCTTG
TGATTTCATCTCGATCAATCTGCAGTATACTAACTATAGTGAGTGATGAAAAAACGTACGGCGTCGACGAGGAGGCGGTCCTTCTTGGCGTGGAGCGCGG
CGACCTGCTCCACGAAGTGCGGGTTCCGCTCCGGCCTGCCGCGCGGTGTGACGGAGAGGTAGTAGGGCACGTTGCGCGCGCCGGCGACGTGGCCCGCGTC
GAAGTCCTCCCACATCCGCACGTCGATGTAGCCGTACTGGCCCGAGGCCAGCAGCGCGCACGCCGCCACCGAGTCCACGCTCTCCACCAGAGCCGTGGTC
TTGTCGCCGCCGGTGGCGCTGGGAGTTCCCAGGGAGCCCATGGAGATGTGGAGAGGGTCTGGTTGGTGGTGCGTTTGGCTCCGGGGGCTGTGGAGGGAG