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Detailed information on CNT3025177


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CH33|UBQ11_ARATH, E-value = 2e-159

BLAST vs NONCODE:
NONMEST001181, E-value = 3e-145

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3069548Populus trichocarpaQuercus suber62.2785.7784.73609forward
CNT30506305Populus trichocarpaNicotiana attenuata70.5573.1783.77690forward
CNT30171101Populus trichocarpaTrifolium pratense70.8641.6784.27693forward
CNT30605497Populus trichocarpaGossypium raimondii70.1490.584.99686forward
CNT3032610Populus trichocarpaTheobroma cacao73.1188.3885.17715forward

Expression of CNT3025177

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MVSELSTSRVMVFPVKVLTKICIPPRSRSTK*

>peptide 2 (48 aa)
TKAHMNKLKFICLNTKACNGTALNSQSKQYQTGRKHQLQKSTVIIYLK*

>peptide 3 (30 aa)
MVFPVRVLTKICMPPLKRSTKWRVDSFWML*

>peptide 4 (53 aa)
MRKLKNHHGDGGQGEGWTPSGYCSLLGCVHLPTAFRQRSTFVGQGVFLPCPGS*

Sequence

>CNT3025177
AACAAAAGCGCATATGAATAAACTAAAATTTATTTGCTTAAATACGAAAGCTTGCAATGGAACGGCCCTTAACAGCCAATCCAAACAGTACCAAACTGGA
CGCAAACACCAACTTCAAAAGAGTACAGTAATAATTTATTTAAAGTAGCCATTCGAAAATGGCTACTGAGCACACACAAGAGCCCCACGAGGCATAAAAC
ACCCAAGACAACATGCGGAAGCTTAAAAACCACCACGGAGACGGAGGACAAGGTGAAGGGTGGACTCCTTCTGGATATTGTAGTCTGCTAGGGTGCGTCC
ATCTTCCAACTGCTTTCCGGCAAAGATCAACCTTTGTTGGTCAGGGGGTATTCCTTCCTTGTCCTGGATCTTAGCCTTGACATTGTCAATGGTGTCTGAG
CTCTCCACCTCCAGGGTGATGGTCTTTCCAGTCAAAGTCTTAACAAAGATTTGCATTCCTCCACGCAGCCGAAGCACCAAGTGAAGGGTTGACTCCTTCT
GGATGTTGTAGTCAGCAAGTGTCCTTCCATCTTCAAGCTGTTTTCCAGCAAAAATCAACCTCTGCTGGTCCGGTGGGATCCCCTCCTTGTCCTGAATTTT
GGCCTTCACATTATCGATAGTGTCAGAGCTCTCCACCTCCAAGGTGATGGTCTTTCCAGTAAGGGTCTTAACAAAGATTTGCATGCCACCTCTCAAACGG
AGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCAGCAAGGGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAAAATCAGCCTCTGCTGGTCTG
GTGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTAACATTATCAATAGTGTCTGAGCTTTCCACCTCAAGGGTGATGGTCTTGCCAGTAAGAGTCTTGAC
GAAGATTTGCATCTGACACCCCAAAAAAGTAAAATCAGAGACAAACTAGATTCAGATCTCAACATATAACAATCCTTC