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Detailed information on CNT3025169


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CG83|UBIQP_HORVU, E-value = 1e-97

BLAST vs NONCODE:
NONMEST001181, E-value = 1e-100

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3072510Populus trichocarpaQuercus suber65.0988.5985.71427forward
CNT30620193Populus trichocarpaCajanus cajan66.1667.686.18434forward

Expression of CNT3025169

Peptides detected in this lncRNA

>peptide 1 (57 aa)
KEYSNNLFKVAIRKWLLSTHKSPTRHKTPKTTCGSLKTTTETEDKVKGGLLLDIVVC*

>peptide 2 (30 aa)
MVFPVRVLTKICMPPLKRSTKWRVDSFWML*

>peptide 3 (45 aa)
MRKLKNHHGDGGQGEGWTPSGYCSLLGCVHLPTAFRQRSTFVVKG*

Sequence

>CNT3025169
AAAAGAGTACAGTAATAATTTATTTAAAGTAGCCATTCGAAAATGGCTACTGAGCACACACAAGAGCCCCACGAGGCATAAAACACCCAAGACAACATGC
GGAAGCTTAAAAACCACCACGGAGACGGAGGACAAGGTGAAGGGTGGACTCCTTCTGGATATTGTAGTCTGCTAGGGTGCGTCCATCTTCCAACTGCTTT
CCGGCAAAGATCAACCTTTGTTGTGAAGGGTTGACTCCTTCTGGATGTTGTAGTCAGCAAGTGTCCTTCCATCTTCAAGCTGTTTTCCAGCAAAAATCAA
CCTCTGCTGGTCCGGTGGGATCCCCTCCTTGTCCTGAATTTTGGCCTTCACATTATCGATAGTGTCAGAGCTCTCCACCTCCAAGGTGATGGTCTTTCCA
GTAAGGGTCTTAACAAAGATTTGCATGCCACCTCTCAAACGGAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCAGCAAGGGTGCGGCCAT
CCTCAAGCTGCTTGCCGGCGAAAATCAGCCTCTGCTGGTCTGGTGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTAACATTATCAATAGTGTCTGAGCT
TTCCACCTCAAGGGTGATGGTCTTGCCAGTAAGAGTCTTGACGAAGATTTGCATCT