Detailed information on CNT30251672


BLAST search results

BLAST vs Swiss-Prot:
sp|P69309|UBIQP_AVEFA, E-value = 7e-102

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30138140Avena sativaLolium perenne6966.6293.04503forward

Expression of CNT30251672

Peptides detected in this lncRNA

>peptide 1 (63 aa)
MARHLLATTETEHQVKGGLLLDVVVCQSAPILKLLTSKDQTLLVRGDALLVLDLGLHVVDGVR*

>peptide 2 (43 aa)
MRRCWSGGMPSLSWIFALTLSMVSDDSTSSVMVLPVRVFTKICI

>peptide 3 (53 aa)
MPSLSWILAFTLSMVSDDSTSRVMVLPVRVLTKICMPPRRRSTKWRVDSFWML*

>peptide 4 (68 aa)
EASKNKSTTLKNRIRKFRAHLFIHSKVQPNLWHHNRAQVHRHKHKTEHITVSNKDWTRQDTLTNSVGR*

>peptide 5 (51 aa)
QKHQRTKVQHSKTVFANSGLTYSFIPKFNQICGITTEHKFIDTNIRLNTSR*

>peptide 6 (40 aa)
RSIKEQKYNTQKPYSQIQGSLIHSFQSSTKSVASQQSTSS*

Sequence

>CNT30251672
CAGAAGCATCAAAGAACAAAAGTACAACACTCAAAAACCGTATTCGCAAATTCAGGGCTCACTTATTCATTCATTCCAAAGTTCAACCAAATCTGTGGCA
TCACAACAGAGCACAAGTTCATAGACACAAACATAAGACTGAACACATCACGGTAAGTAACAAAGACTGGACCAGACAGGACACGCTGACAAACTCTGTT
GGAAGATGATACGGGAGGCACCGGACTTGTGAAACCAGACGCAGAAGCAACTCCATGGCCAGGCACTTACTGGCCACCACGGAGACGGAGCACCAGGTGA
AGGGTGGACTCCTTCTGGATGTTGTAGTCTGCCAGAGTGCGCCCATCCTCAAGCTGCTTACCAGCAAAGATCAGACGCTGCTGGTCCGGGGGGATGCCCT
CCTTGTCCTGGATCTTGGCCTTCACGTTGTCGATGGTGTCAGATGACTCAACCTCCAGGGTGATGGTCTTGCCAGTGAGGGTCTTGACAAAGATCTGCAT
GCCACCACGAAGGCGGAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCAAGGGTGCGGCCATCCTCGAGTTGCTTGCCGGCAAAGATG
AGGCGCTGCTGGTCTGGAGGGATGCCTTCCTTGTCCTGGATCTTCGCCTTGACATTGTCGATGGTGTCAGACGACTCGACCTCAAGTGTGATGGTCTTGC
CAGTGAGGGTCTTCACAAAGATCTGCATC