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Detailed information on CNT30251666


BLAST search results

BLAST vs Swiss-Prot:
sp|P12331|CB22_ORYSJ, E-value = 8e-142

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30473739Avena sativaSaccharum spontaneum58.9279.9291.68601forward
CNT30369334Avena sativaOryza glumipatula58.9263.7388.69601forward
CNT30582730Avena sativaEchinochloa crusgalli59.5138.3292.92607forward
CNT30603498Avena sativaOryza punctata52.7558.4891.08538forward
CNT30556492Avena sativaPanicum hallii61.8668.8190.17631forward

Expression of CNT30251666

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MVMRPSPKGEALEAFTGVPAIAGEESAMVEAAIAR*

>peptide 2 (29 aa)
MAQREWMTSSSRFLAKVSGSAERPAVSQP*

>peptide 3 (46 aa)
MAWTKNPNMENMARRPFLSSLTLSSAKASGSSARMLWACTRLGLPR*

Sequence

>CNT30251666
GAAAATTCAGAGATCTTCTGCATGTATTGACATTCAGAGAAACCAATAATAATTAAGCAGAAGAAGAAAAGATGCCTTGATGAATAACCATAAACACCAT
GATCTTTAGTGTACAACACCAACTCCTCATCTCGACTCGCCTTAACATGATCTATCAGTGACGACACACACATGCAGCAGCAGCAGCATTCAGCAATGAA
GTGGTCGGCCAAGCGCGCGCACGACGCAGCACACGCTAGAGGTTGAGCTTACTAATAAGCTCTTACTTGCCGGGGACGAAGTTGGTGGCGAAGGCCCATG
CGTTGTTGTTGACGGGGTCGGCGAGGTGGTCGGCGAGGTTCTCGAGGGGGCCCTTGCCGGTGACGATGGCCTGGACGAAGAATCCGAACATGGAGAACAT
GGCGAGGCGTCCGTTCTTGAGCTCCTTGACCTTGAGCTCGGCGAAGGCCTCCGGGTCGTCGGCGAGGATGCTCTGGGCGTGCACGAGGCTGGGGTTGCCG
AGGTAGTCGAGGCCGCCCTCGCTGAAGATCTGGGAGCCTGCCTTGAACCAGACGGCCTCGCCGAACTTGACGCCGTTGCGGGCGAGCAGCTCGGGGAAGA
CGCAGCCGAGGGCGCCGAGCATGGCCCAGCGGGAGTGGATGACCTCGAGCTCGCGGTTCTTGGCGAAGGTCTCGGGGTCGGCGGAGAGGCCGGCGGTGTC
CCAGCCGTAGTCGCCGGGGAACTCGCCGGTGAGGTAGCTGGGGGGCTCGCCGGAGAGCGGGCCGAGGTAGAGCACGCGGTCGGAGCCGTACCAGGGGCTG
CCGGACGCGGACACCTTGGGCTTGGCGGCCGTCTTGCGCATGGTGATGCGGCCCTCGCCGAAGGGGGAGGCCCTGGAGGCCTTCACGGGGGTGCCGGCCA
TCGCCGGGGAGGAGAGCGCCATGGTGGAGGCTGCCATTGCTCGCTAGTCTGAGGTGAGGTGCTTCGAGTGAGCTCTCAGGTAGTAGTAGTAGATGGTGGT
CTACCAACAGCCTATGCTGC