Detailed information on CNT30251661


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30522452Avena sativaSetaria italica15.5624.7884.43167forward
CNT30309159Avena sativaTriticum aestivum21.9941.3388.98236forward
CNT30555228Avena sativaOryza glaberrima12.7720.383.21137forward
CNT30659258Avena sativaTriticum dicoccoides18.6494.3489200forward
CNT30103605Avena sativaOryza rufipogon18.7329.7383.08201forward
CNT30498787Avena sativaDigitaria exilis12.2121.6981.68131forward

Expression of CNT30251661

Peptides detected in this lncRNA

>peptide 1 (31 aa)
IGNIFIFSTAPKNHNHITNLGKEIHITRTIS*

>peptide 2 (37 aa)
MVVGVGLRLRLRLRLWWHRLLVVEVREELLDRSAHGD*

>peptide 3 (46 aa)
MPTSSTVGGGGRDWVVVRVGLRLWFRLWRHGLLVVEVLNDVLLKRT*

>peptide 4 (61 aa)
MGTTLDGSWPGHGALEAALWSCARQSAPWRSAARGTLKAPVPSRPPTALLSYSPWTFLHLIA

>peptide 5 (31 aa)
MVPGQGTARWRRRCGAAQGSRRRGGRRRGAR*

Sequence

>CNT30251661
GATAGGCAACATATTTATATTCTCAACAGCTCCAAAAAATCACAACCATATTACAAATCTTGGTAAAGAAATACACATCACCCGTACAATTTCCTAACAC
CCCTCTCTCTCCTTCATAATTGTTATTATGACTCTGAATTCTGAGAATGCTTAAGAAAAAGGGGTAGAAAACAATAGAAGTCCAAACCAGCCGTGCATGT
AACTAATCATAATTAGCAACGGCTTCGATCAATCACTCATATGAACATGAAACCATATAGATTTCAGTGCTGGGCAGGAGGGTGGTAGATGGGGGTCGAG
GGGTGTCCACCGACGCTGCCGTAGGTGGGGGTGGGAGGAACGGGGTGGTAGTCTGGTTGGGGCTGCGGCTTGGGCTCAGGCTTGGATGGCATTGGCTTCT
TGTGGTGGAAGTGCTCGATGATGTGCTTCTTGGTCGGGCCCAAGAAGGTCTTTGACTCGCTGTGGTAGACCGGAGTGGAGGGATGCCCACCTCCTCCACT
GTAGGTGGGGGTGGGAGGGACTGGGTGGTAGTCCGGGTGGGGCTGCGGCTTTGGTTCCGGCTTTGGCGGCACGGGCTTCTTGTGGTGGAAGTGCTCAATG
ATGTGCTTCTTAAACGGACCTAAGAAAGTCTTTGACTCGGCGTGGTAGATCAGAGTGGAGGGGTGTCCACCTCCTCCGCCATAGGTGGGAGTGGGTGGGA
TAGGATGGTAGTCGGGGTGGGGCTGAGGCTTCGGCTCCGGCTCCGGCTTTGGTGGCACAGGCTGCTTGTGGTGGAAGTGCGCGAGGAACTTCTTGACCGG
TCCGCACATGGTGACTGAGGCGCACTCCGGCGACAGTGTGGGAGTCTTGGCGCCGGCGACTATGCCGTAGGTGGTGCCCTCGGAGATGGGGACGACCTTG
GATGGTTCCTGGCCAGGGCACGGCGCGTTGGAGGCGGCGCTGTGGAGCTGCGCAAGGCAGTCGGCGCCGTGGAGGTCGGCGGCGAGGGGCACGCTGAAGG
CGCCAGTGCCGTCTAGGCCGCCCACCGCCTTGCTCTCGTACTCGCCGTGGACGTTCTTGCACTTGATCGCCAC