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Detailed information on CNT30250974


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695840Avena sativaOryza sativa29.318.3184.13126forward
CNT30402735Avena sativaBeta vulgaris21.46.7584.7892forward
CNT30631186Avena sativaVigna unguiculata26.059.8989.29112forward
CNT30712266Avena sativaGlycine max2031.3988.3786forward
CNT30635894Avena sativaCapsicum annuum30.9323.6288.72133forward
CNT3095185Avena sativaSolanum tuberosum24.887.1988.79107forward
CNT30187559Avena sativaSecale cereale28.618.4494.31123forward
CNT30298225Avena sativaTriticum aestivum24.6513.8692.45106forward
CNT30224612Avena sativaHordeum vulgare61.6346.6586.42265forward
CNT30510308Avena sativaSolanum lycopersicum27.4445.7488.98118forward
CNT30314068Avena sativaCamelina sativa22.796.4683.6798forward
CNT30227528Avena sativaAnanas comosus61.8636.5985.71266forward
CNT30721901Avena sativaTriticum spelta28.8424.3194.35124forward
CNT30704690Avena sativaPrunus avium26.745.6687.83115forward
CNT30107297Avena sativaOryza longistaminata31.6330.2992.65136forward
CNT30323609Avena sativaAsparagus officinalis31.638.1786.76136forward
CNT30149846Avena sativaBrachypodium distachyon28.8427.9991.94124forward
CNT30577638Avena sativaOryza barthii31.6320.9994.12136forward
CNT30594767Avena sativaEragrostis curvula14.4224.0388.7162forward

Expression of CNT30250974

Peptides detected in this lncRNA

>peptide 1 (55 aa)
ELFHKAQTNIANRAYCLASQETKPIQLNVPKPSNSSQKDKLGGGGAGANEDCRGA*

Sequence

>CNT30250974
CGAACTGTTCCACAAAGCACAGACGAATATAGCTAACCGCGCTTACTGTTTGGCCAGCCAAGAGACAAAACCGATACAGCTAAACGTGCCAAAACCATCC
AACAGCAGTCAGAAAGATAAACTAGGCGGTGGTGGTGCAGGTGCAAACGAAGACTGCCGTGGCGCTTAGTCGACCTCCTCCATCTTGCTCTCACCAGCAT
CATCCTCCAGGGGTGGCATGTCGGTGTCGTTCTCGGTGGCCTCCTCGTCCTCATCAATGCTCAGGCCGAGCTTGAGCATGCGGTGAGCAGGGAGGTCTCG
AAGAGCAGCATCACCAGGTCCTTGACAGACTTGTCATTCTTGTCGGCATCGGCGCGCTTGCGGAGCTCATCCATGATGGCGTTCTCAGGGTTGATCTCCA
TGGTCTTCTTGCTGGACATGTAGCCAGCCA