Detailed information on CNT30250949


BLAST search results

BLAST vs Swiss-Prot:
sp|Q2QYL3|NLTP3_ORYSJ, E-value = 7e-26

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697397Avena sativaOryza sativa21.9517.6792.0588forward
CNT30677319Avena sativaSetaria viridis16.4624.1886.3666forward
CNT30386779Avena sativaTriticum turgidum48.8826.1785.2196forward
CNT30555884Avena sativaOryza glaberrima20.9525.5391.6784forward
CNT30436289Avena sativaAegilops tauschii48.8843.3685.71196forward
CNT30658660Avena sativaTriticum dicoccoides48.8826.9285.71196forward
CNT30138315Avena sativaLolium perenne52.6292.5491.94211forward
CNT30578365Avena sativaOryza barthii21.9515.5592.0588forward

Expression of CNT30250949

Peptides detected in this lncRNA

>peptide 1 (32 aa)
LGAVDAGADGEGDGDAAFAGDAGGVAHVEALG*

>peptide 2 (42 aa)
LEQSTLELMGKETVTPHLLGMLAALPMLRLLDEPARVLRPCR*

>peptide 3 (57 aa)
MAEVTSPQDTAADAFSATTSAAITVNTTSSATRAIEGLLRVGSNCGSRKKQFRAEDW*

Sequence

>CNT30250949
CTTGGAGCAGTCGACGCTGGAGCTGATGGGGAAGGAGACGGTGACGCCGCATTTGCTGGGGATGCTGGCGGCGTTGCCCATGTTGAGGCTCTTGGATGAG
CCCGCCAGGGTCTTGAGGCCTTGCCGTTGAGGGACTTCACCCCGCTGCAGCACCCCGCCGACGGCGTCGCTGCCTTCCCCGTCGCGTACGACATACACGG
CGCGATGGCGGAGGTCACGTCGCCGCAGGACACGGCCGCCGACGCCTTCTCGGCGACCACAAGCGCCGCGATCACGGTGAACACGACGAGCAGTGCCACG
CGAGCCATCGAGGGTCTGCTTCGGGTTGGTAGCAACTGTGGATCTAGGAAGAAGCAGTTCAGAGCTGAAGATTGGTAGCTTTAGCTTGTGCGTGGTGGTG
G