Detailed information on CNT30250827


BLAST search results

BLAST vs Swiss-Prot:
sp|P31922|SUS1_HORVU, E-value = 1e-44

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30678320Avena sativaSetaria viridis27.0942.1586.1794forward
CNT3061548Avena sativaArabidopsis lyrata30.2612.8284.76105forward
CNT30141453Avena sativaLolium perenne51.8756.7896.67180forward
CNT3016329Avena sativaZea mays38.6226.7582.84134forward
CNT30713351Avena sativaMalus domestica golden20.4616.0685.9271forward
CNT30679535Avena sativaTriticum urartu29.9740.1590.38104forward
CNT30361762Avena sativaSorghum bicolor24.7826.2288.3786forward

Expression of CNT30250827

Peptides detected in this lncRNA

>peptide 1 (61 aa)
MVTSNNHKVCQILQMSILTELSLLLSILGLLSMVTSNNHKVCQILQMSILTEHLNQACHVLH

>peptide 2 (43 aa)
MWPFSLYSSMRLYILLNSACSSLSLDSFPWSPATITRFAKSFR*

>peptide 3 (34 aa)
LPWCHKCSGTTLRSEHGSSELRSTGCGPSACTPQ*

Sequence

>CNT30250827
GCTCCCTTGGTGTCACAAATGTAGCGGTACAACTCTCCGTTCCGAACACGGTTCATCTGAGCTGAGATCCACCGGATGTGGCCCTTCAGCTTGTACTCCT
CAATGAGACTGTACATCCTTTTGAACTCAGCCTGCTCCTCTCTATCCTTGGACTCCTTTCCATGGTCACCAGCAACAATCACAAGGTTTGCCAAATCCTT
CAGATGAGCATTCTTACCGAACTCAGCCTGCTCCTCTCTATCCTTGGACTCCTTTCCATGGTCACCAGCAACAATCACAAGGTTTGCCAAATCCTTCAGA
TGAGCATTCTTACCGAACATCTCAACCAAGCCTGTCATGTTCTTCAC