CANTATAdb - search

Detailed information on CNT30250793

BLAST search results

BLAST vs Swiss-Prot:
sp|P12329|CB21_MAIZE, E-value = 5e-147

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30696255	Avena sativa	Oryza sativa	58.63	70.6	89.13	598	forward
CNT30299182	Avena sativa	Triticum aestivum	67.45	64.72	92.88	688	forward
CNT30440100	Avena sativa	Aegilops tauschii	67.45	67.45	92.15	688	forward
CNT30665254	Avena sativa	Triticum dicoccoides	68.73	70.31	92.58	701	forward
CNT30684955	Avena sativa	Triticum urartu	65.98	67.84	92.42	673	forward
CNT30362364	Avena sativa	Sorghum bicolor	62.84	62.97	89.7	641	forward
CNT30596886	Avena sativa	Oryza meridionalis	56.47	56.58	90.1	576	forward
CNT30369242	Avena sativa	Oryza glumipatula	53.92	56.76	89.45	550	forward
CNT30603531	Avena sativa	Oryza punctata	61.27	57.34	89.92	625	forward

Expression of CNT30250793

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MENMARRPFLSSLTLSSAKASGSSARPRGSKLPPG*

>peptide 2 (29 aa)
MAQREWMTSSSRFLAKVSGSAERPAVSQP*

>peptide 3 (36 aa)
MVMRPSPKGEALEAFMGVPAIAGEESAMVEAAICSL*

Sequence

>CNT30250793
TTTCAGAAAGTTCAGAGATCTTAAGTAGTATTGACATTCAGAGAAACCAATAGTTAAGCAGAAGAAGAAAGATTCCTTGATGAATAACCATAAACACCAT
GATCTTTAGTGTACAACACCAACTCCTCATCTGGACTCGCCTTAACATGATCCATCAGTGACGACACACATGCAGCAGCAGCATCATTCAGCAATGAAGT
GGTCGGCCAAGCGCGCGCACGCAGCACACGCTAGAGGTTGAGCGAACTAAGCTCTTACTTGCCGGGGACGAAGTTGGTGGCGAAGGCCCAGGCGTTGTTG
TTGACGGGGTCGGCGAGGTGGTCGGCGAGGTTCTCGAGGGGACCCTTGCCGGTGACGATGGCCTGAACGAAGAAGCCGAACATGGAGAACATGGCGAGGC
GTCCGTTCTTGAGCTCCTTGACCTTGAGCTCGGCGAAGGCCTCCGGGTCGTCGGCGAGGCCGAGGGGGTCGAAGCTGCCTCCGGGGTAGAGCGGGTCGAC
GATCTCACCGAGCGGGCCGCCCTCGCTGAAGATCTGGGAGCCGGCCTTGAACCAGACGGCCTCGCCGAACTTGACGCCGTTGCGGGCGAGCAGCTCGGGG
AAGACGCAGCCGAGGGCGCCGAGCATGGCCCAGCGGGAGTGGATGACCTCGAGCTCGCGGTTCTTGGCGAAGGTCTCGGGGTCGGCGGAGAGGCCCGCGG
TGTCCCAGCCGTAGTCGCCGGGGAACTCGCCGGTGAGGTAGCTAGGGGGCTCGCCGGAGAGCGGGCCGAGGTAGAGCACGCGGTCGGAGCCGTACCAGGG
GCTGCCGGACGCGGACACCTTGGGCTTGCCGGCCGTCTTGCGCATGGTGATGCGGCCCTCGCCGAAGGGGGAGGCCCTGGAGGCCTTCATGGGGGTGCCG
GCCATCGCCGGGGAGGAGAGCGCCATGGTGGAGGCTGCCATTTGCTCGCTCTGATCGAGGTGAGGTGTGCTTCGAGTGAGCTCGGGTGGTAGGAGTTGCT
GGTGTCTGTTGGTGCTGTGG