Detailed information on CNT30250642


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30677151Avena sativaSetaria viridis3.3820.7491.1145reverse complement
CNT30553137Avena sativaOryza glaberrima9.653.3391.41128reverse complement
CNT30680889Avena sativaTriticum urartu13.1324.3492.57175reverse complement
CNT30340274Avena sativaEragrostis tef9.2341.8491.06123reverse complement
CNT30148014Avena sativaBrachypodium distachyon10.4349.2992.81139forward
CNT30575833Avena sativaOryza barthii12.324.4892.07164forward

Expression of CNT30250642

Peptides detected in this lncRNA

>peptide 1 (67 aa)
MPALLHRLPRYMRWKIQQTSCEVSLVSCWHILLATVQTYLLHHEINTHRRAMLCGVAACGTPTILAE*

>peptide 2 (32 aa)
MGSLGIQCVAPLPLCLPVPAWVSLLFLPGSDP*

>peptide 3 (34 aa)
MHLGGGQDLITAYNMEDNELWTRHVLTAVCPKPL*

>peptide 4 (39 aa)
MGISSAVDWWEVLHPRPAWEAWVFSAWLLFLSASQSQPG*

>peptide 5 (46 aa)
MQNLCLLLKRKPFQLFLNSFLQKDFRLLGECLAIRYNFLELRFSIF*

>peptide 6 (58 aa)
MPRVPTCQEFGHRWGVTDLYLAFSVTHGHGDLAGEAAEDRAFKWRRKCRRSYIDFPDT*

>peptide 7 (59 aa)
MSSPLCVPNHCSHLVCVLQIMARRRQEVIYCRRQPCSLSQESSNALRNPGLSRVLASIA*

>peptide 8 (89 aa)
MCFANHGQAATRGYILQASTLLFVPGILKCIEKPWALKSASFNSLVRSSVPYLHPEMMTGRESRLARPSQQVDAEGTYMPRVWAPVGSY*

>peptide 9 (86 aa)
MGMETLPEKLQRTELSSGEGNAGAPTSTSQIHEMEDPTNFMRGLFSKLLAHPPRNRTDVPASSRDKYPPKSHALWSSCLRNPNYTS*

Sequence

>CNT30250642
TTAGTACGTAGCTGAACATTAATTGAGCTGAGAGCGGAGCAGAAACCAAGAGCAAGAGACAGAGCGAAAAAAATAGTAGATGGGTATCTCGAGTGCTGTG
GATTGGTGGGAGGTGTTGCATCCTCGTCCTGCATGGGAAGCCTGGGTATTCAGTGCGTGGCTCCTCTTCCTCTCTGCCTCCCAGTCCCAGCCTGGGTAAG
CTTGCTATTCCTTCCTGGTTCAGATCCATAATATGGCTAGCATACCTTGGCAGTGACGCTGCTGTATCCATATATGGCCTGGCTACCCTCTTTAACCGCC
ATAGAAAACAGGATTATGGTTCTGCAAACAGCAATAGCACCCTAGAGGTGGTCTGGGCGCCGGTCTTCCTGATGCACCTCGGTGGTGGACAGGACCTCAT
AACCGCATACAACATGGAAGACAACGAGTTGTGGACACGGCATGTCCTCACCGCTGTGTGTCCCAAACCACTGTAGCCATCTAGTATGTGTTTTGCAAAT
CATGGCCAGGCGGCGACAAGAGGTTATATATTGCAGGCGTCAACCTTGCTCTTTGTCCCAGGAATCCTCAAATGCATTGAGAAACCCTGGGCTCTCAAGA
GTGCTAGCTTCAATAGCCTAGTCAGATCATCTGTCCCTTATCTCCATCCAGAGATGATGACAGGTAGGGAGAGCAGGCTTGCTCGCCCTTCTCAGCAAGT
AGATGCCGAGGGTACCTACATGCCAAGAGTTTGGGCACCGGTGGGGAGTTACTGACCTATATCTGGCTTTTTCTGTCACGCATGGGCATGGAGACCTTGC
CGGAGAAGCTGCAGAGGACAGAGCTTTCAAGTGGAGAAGGAAATGCCGGCGCTCCTACATCGACTTCCCAGATACATGAGATGGAAGATCCAACAAACTT
CATGCGAGGTCTCTTTAGTAAGCTGCTGGCACATCCTCCTCGCAACCGTACAGACGTACCTGCTTCATCACGAGATAAATACCCACCGAAGAGCCATGCT
TTGTGGAGTAGCTGCCTGCGGAACCCCAACTATACTAGCTGAATAATGAGAAATTATTATCCCTTTATTTAATAGTGTATTACCAATTTGAACTCAACGA
TTCTTCTTCTACTAGCAAGAGCAGACATGCAAAATTTATGTTTGTTGCTGAAGAGAAAACCATTCCAGCTGTTCCTGAATAGCTTCCTTCAAAAGGATTT
CCGCTTGCTTGGTGAATGTCTTGCTATAAGATACAATTTCTTGGAATTGAGGTTTAGTATCTTTTAGGTTCTTCCATTTCTTTATTTATGTGAAGCTGCA
CTACTCCAGTCTGTTTGTGTTGTCCAAATGCCA