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Detailed information on CNT30250555


BLAST search results

BLAST vs Swiss-Prot:
sp|P12329|CB21_MAIZE, E-value = 1e-134

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30395272Avena sativaTriticum turgidum63.968.3691.18646forward
CNT30666199Avena sativaTriticum dicoccoides65.1869.0892.72659forward
CNT3010578Avena sativaZea mays45.874.9291.14463forward
CNT30685729Avena sativaTriticum urartu63.965.7893.19646forward
CNT30345515Avena sativaEragrostis tef59.0570.3288.27597forward
CNT30574779Avena sativaOryza barthii57.9672.785.32586forward
CNT30117539Avena sativaOryza nivara58.0649.785.52587forward

Expression of CNT30250555

Peptides detected in this lncRNA

>peptide 1 (38 aa)
MVMRPSPKGEALEAFTGVPAIAGEESAMVEAAINCSLV*

Sequence

>CNT30250555
CGAACTTTCAGAAAATTCAGAGATCTTCTGCATGTATTGACATTCAGAGAAACCAATAATAATTAAGCAGAAGAAGCAAAGATGCCTTGATGAATAACCA
TAAACACCATGATCTTTAGTGTACAACACCAACTCCTCATCTCGACTCGCCTTAACATGATCTATCAGTGACGACACACACATGCAGCAGCAGCATCATT
CAGCAATGAAGTGGTCGGCCAAGCGCGCGCACGCAGCACACGCTAGAGGTTGAGCTTACTAATAAGCTCTTACTTGCCAGGGACGAAGTTGGTGGCGAAG
GCCCAGGCGTTGTTGTTGACAGGGTCGGCGAGGTGGTCGGCGAGGCGTCCGTTCTTGAGCTCCTTGACCTTGAGCTCTGCGAAGGCCTCCGGGTCGTCGG
CGAGGCCGAGGGGGTCGAAGCTGCCTCCGGGGTAGAGCGGGTCGACGATCTCACCCAGCGGTCCACCGGCGACGCGGTACCCCTCGACGGCGCCCATGAG
CACGACCTGACAGGCCCAGATGGCGAGGATACTCTGGGCGTGTACGAGGCTGGGGTTGCCGAGGTAGTCGAGGCCTCCCTCGCTGAAGATCTGGGAGCCT
GCCTTGAACCAGACGGCCTCGCCGAACTTGACGCCATTGCGGGCGAGCAGCTCGGGGAAGACGCAGCCGAGGGCGCCGAGCATGGCCCAGCGGGAGTGGA
TGACCTCGAGCTCGCGGTTCTTGGCGAAGGTCTCGGGGTCGGCGGAGAGCGGGCCGAGGTAGAGCACGCGGTCGGAGCCGTACCAGGGGCTGCCGGACGC
GGACACCTTGGGCTTGGCGGCCGTCTTGCGCATGGTGATGCGGCCCTCGCCGAAGGGGGAGGCCCTGGAGGCCTTCACGGGGGTGCCGGCCATCGCCGGG
GAGGAGAGCGCCATGGTGGAGGCTGCCATTAATTGCTCGCTAGTCTGAGGTGAGGTGCTTCGAGTGAGCTCTCAGGTAGTAGTAGGAGCTGGTGGTGTCT
GTTGGTGCTGT