Detailed information on CNT30250445


BLAST search results

BLAST vs Swiss-Prot:
sp|Q8LCE1|GLN12_ARATH, E-value = 3e-39

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671311Avena sativaSetaria viridis25.8249.6588.65141forward
CNT30296689Avena sativaTriticum aestivum42.8644.496.15234forward
CNT30392802Avena sativaTriticum turgidum26.0119.5194.37142forward
CNT301731Avena sativaZea mays32.630.7490.45178forward
CNT30683585Avena sativaTriticum urartu26.0122.3693.66142forward
CNT30351207Avena sativaEragrostis tef34.2528.6890.91187forward
CNT30364720Avena sativaSorghum bicolor36.8131.786.57201forward
CNT3040612Avena sativaMarchantia polymorpha21.0611.7388.7115forward

Expression of CNT30250445

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MCSVCRLPSFSMAFLITSNPPSSRIDLVL*

>peptide 2 (65 aa)
GRLDRNTTGSVNSFIRMRKHKHYSEYTGDSYRKRVHRRKKKNRQWPLNETFVRYAKESKIQGSEL*

Sequence

>CNT30250445
GGAAGATTGGACAGAAACACAACCGGTTCCGTAAATTCATTTATCAGAATGCGGAAACATAAGCATTATTCAGAGTACACTGGAGACTCTTACAGAAAAA
GAGTACACCGAAGGAAGAAAAAAAACAGACAATGGCCGCTAAATGAGACCTTTGTAAGGTACGCGAAGGAATCGAAAATACAAGGAAGCGAACTTTGACA
ATTTTGCGGAAATCAACCATCACCACCACCCTCGATCGAGAGAGTCGAGGACGCAGCAACCATCATCATCGTTGCCGTTTGTGTGTAGGTGTAGGTGTAG
GGTGGTTGGTGTTCAGAGGAGGAGCGTGGTCTCGGCGATCATGGAGGTGTTGATGTCGGCGGTCTCGTGGTGGCCCGTCAGGCGGCGCTCGTTGCCCTCG
CCGTAGGCGGCGATGTGCTCCGTGTGCCGCTTGCCCAGCTTCTCGATGGCCTTCTTGATCACCTCGAACCCGCCTTCCTCCCGCATCGACTTGGTGCTGT
AGTTGGTGTGCGCGCCGGCGCCGTTCCAGTCGCCGGGGATCGGCTT