CANTATAdb - search

Detailed information on CNT30250314

BLAST search results

BLAST vs Swiss-Prot:
sp|P08222|CB22_CUCSA, E-value = 1e-43

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30188029	Avena sativa	Secale cereale	62.88	59.42	90	410	forward
CNT30224983	Avena sativa	Hordeum vulgare	76.84	82.13	86.43	501	forward
CNT30393906	Avena sativa	Triticum turgidum	60.89	55.22	90.93	397	forward
CNT30664919	Avena sativa	Triticum dicoccoides	60.89	53.87	91.44	397	forward
CNT30721767	Avena sativa	Triticum spelta	60.89	52.86	90.93	397	forward

Expression of CNT30250314

Peptides detected in this lncRNA

>peptide 1 (46 aa)
MACTKNPNMENMARRPFLSSLTLSSAKASGSSARILWACTRLGLPR*

>peptide 2 (38 aa)
MVMRPSPKGEALEAFTGVPAIAGEESAMVEAAINCSLV*

Sequence

>CNT30250314
GATCTTTAGTGTACAACACCAACTCCTCATCTCGACTCGCCTTAACATGATCTATCAGTGACGACACACACATGCAGCAGCAGCATCATTCAGCAATGAA
GTGGTCGGCCAAGCGCGCGCACGCAGCACACGCTAGAGGTTGAGCTTACTAATAAGCTCTTACTTGCCAGGGACGAAGTTGGTGGCGAAGGCCCAGGCGT
TGTTGTTGACAGGGTCGGCGAGGTGGTCGGCGAGGTTCTCGAGGGGGCCCTTGCCGGTGACGATGGCCTGTACGAAGAATCCGAACATGGAGAACATGGC
GAGGCGTCCGTTCTTGAGCTCCTTGACCTTGAGCTCTGCGAAGGCCTCCGGGTCGTCGGCGAGGATACTCTGGGCGTGTACGAGGCTGGGGTTGCCGAGG
TAGAGCACGCGGTCGGAGCCGTACCAGGGGCTGCCGGACGCGGACACCTTGGGCTTGGCGGCCGTCTTGCGCATGGTGATGCGGCCCTCGCCGAAGGGGG
AGGCCCTGGAGGCCTTCACGGGGGTGCCGGCCATCGCCGGGGAGGAGAGCGCCATGGTGGAGGCTGCCATTAATTGCTCGCTAGTCTGAGGTGAGGTGCT
TCGAGTGAGCTCTCAGGTAGTAGTAGGAGCTGGTGGTGTCTGTTGGTGCTGT