CANTATAdb - search

Detailed information on CNT30250195

BLAST search results

BLAST vs Swiss-Prot:
sp|P10707|CB2D_SOLLC, E-value = 8e-55

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30672311	Avena sativa	Setaria viridis	53.74	50.51	88.41	345	forward
CNT30441097	Avena sativa	Aegilops tauschii	72.59	78.32	90.13	466	forward

Expression of CNT30250195

Peptides detected in this lncRNA

>peptide 1 (38 aa)
MVMRPSPKGEALEAFTGVPAIAGEESAMVEAAINCSLV*

>peptide 2 (43 aa)
MACTKNPNMENMARRPFLSSLTLSSAKASGSSARPRGSKLPPG*

Sequence

>CNT30250195
GACACACACATGCAGCAGCAGCATCATTCAGCAATGAAGTGGTCGGCCAAGCGCGCGCACGCAGCACACGCTAGAGGTTGAGCTTACTAATAAGCTCTTA
CTTGCCAGGGACGAAGTTGGTGGCGAAGGCCCAGGCGTTGTTGTTGACAGGGTCGGCGAGGTGGTCGGCGAGGTTCTCGAGGGGGCCCTTGCCGGTGACG
ATGGCCTGTACGAAGAATCCGAACATGGAGAACATGGCGAGGCGTCCGTTCTTGAGCTCCTTGACCTTGAGCTCTGCGAAGGCCTCCGGGTCGTCGGCGA
GGCCGAGGGGGTCGAAGCTGCCTCCGGGGTAGAGCGGGTCGACGATCTCACCCAGCGGTAGCTGGGGGGCTCGCCGGAGAGCGGGCCGAGGTAGAGCACG
CGGTCGGAGCCGTACCAGGGGCTGCCGGACGCGGACACCTTGGGCTTGGCGGCCGTCTTGCGCATGGTGATGCGGCCCTCGCCGAAGGGGGAGGCCCTGG
AGGCCTTCACGGGGGTGCCGGCCATCGCCGGGGAGGAGAGCGCCATGGTGGAGGCTGCCATTAATTGCTCGCTAGTCTGAGGTGAGGTGCTTCGAGTGAG
CTCTCAGGTAGTAGTAGGAGCTGGTGGTGTCTGTTGGTGCTG