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Detailed information on CNT30250005


BLAST search results

BLAST vs Swiss-Prot:
sp|P12329|CB21_MAIZE, E-value = 1e-144

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30186721Avena sativaSecale cereale78.968.1892.32677forward
CNT30285424Avena sativaTriticum aestivum56.1867.792.53482forward
CNT3011673Avena sativaZea mays52.4557.7791.78450forward

Expression of CNT30250005

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MAQREWMTSSSRFLAKVSGSAERPAVSQP*

>peptide 2 (38 aa)
MVMRPSPKGEALEAFTGVPAIAGEESAMVEAAINCSLV*

>peptide 3 (35 aa)
MENMARRPFLSSLTLSSAKASGSSARPRGSKLPPG*

Sequence

>CNT30250005
GACACACACATGCAGCAGCAGCATCATTCAGCAATGAAGTGGTCGGCCAAGCGCGCGCACGCAGCACACGCTAGAGGTTGAGCTTACTAATAAGCTCTTA
CTTGCCAGGGACGAAGTTGGTGGCGAAGAATCCGAACATGGAGAACATGGCGAGGCGTCCGTTCTTGAGCTCCTTGACCTTGAGCTCTGCGAAGGCCTCC
GGGTCGTCGGCGAGGCCGAGGGGGTCGAAGCTGCCTCCGGGGTAGAGCGGGTCGACGATCTCACCCAGCGGTCCACCGGCGACGCGGTACCCCTCGACGG
CGCCCATGAGCACGACCTGACAGGCCCAGATGGCGAGGATACTCTGGGCGTGTACGAGGCTGGGGTTGCCGAGGTAGTCGAGGCCTCCCTCGCTGAAGAT
CTGGGAGCCTGCCTTGAACCAGACGGCCTCGCCGAACTTGACGCCATTGCGGGCGAGCAGCTCGGGGAAGACGCAGCCGAGGGCGCCGAGCATGGCCCAG
CGGGAGTGGATGACCTCGAGCTCGCGGTTCTTGGCGAAGGTCTCGGGGTCGGCGGAGAGGCCCGCGGTGTCCCAGCCGTAGTCGCCGGGGAACTCGCCGG
TGAGGTAGAGCACGCGGTCGGAGCCGTACCAGGGGCTGCCGGACGCGGACACCTTGGGCTTGGCGGCCGTCTTGCGCATGGTGATGCGGCCCTCGCCGAA
GGGGGAGGCCCTGGAGGCCTTCACGGGGGTGCCGGCCATCGCCGGGGAGGAGAGCGCCATGGTGGAGGCTGCCATTAATTGCTCGCTAGTCTGAGGTGAG
GTGCTTCGAGTGAGCTCTCAGGTAGTAGTAGGAGCTGGTGGTGTCTGTTGGTGCTGTG