CANTATAdb - search

Detailed information on CNT30249784

BLAST search results

BLAST vs Swiss-Prot:
sp|Q39654|PSAL_CUCSA, E-value = 3e-49

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30712288	Avena sativa	Glycine max	17.66	25.13	81.38	145	forward
CNT30222490	Avena sativa	Hordeum vulgare	16.69	29.15	96.35	137	forward
CNT30662078	Avena sativa	Triticum dicoccoides	22.41	63.45	92.39	184	forward
CNT30454500	Avena sativa	Saccharum spontaneum	21.44	48.62	88.07	176	forward
CNT30483616	Avena sativa	Chara braunii	12.67	26	82.69	104	forward
CNT30115596	Avena sativa	Oryza nivara	10.23	39.07	86.9	84	forward

Expression of CNT30249784

Peptides detected in this lncRNA

>peptide 1 (48 aa)
MARWRATPYMVRTTLRMVTRPMAPRAPAWPCTGVLRSGPVSAKGPTRR*

>peptide 2 (65 aa)
MALTTKRGLLVVSEAPDRPLGLEHTKLLLLLFSSWLAMGGAYAVAIVFPSASRASSTLLELLEKTC

>peptide 3 (85 aa)
HLHVHRLKQASTAMHVLYMVRVLLEEVWEVEDVEEEVGPDGARDAAEEEPSGELRPALGGLQLVGLLLASREGERWRGGGRRRTW*

Sequence

>CNT30249784
CATTTACACGTACATAGGCTCAAGCAAGCATCTACAGCCATGCATGTACTGTACATGGTAAGAGTTCTACTTGAAGAAGTATGGGAGGTCGAGGACGTAG
AGGAGGAAGTAGGCCCAGACGGCGCCAGAGACGCCGCCGAAGAAGAACCCTCCGGTGAACTGCGCCCAGCCCTCGGCGGTCTGCAGCTTGTCGGCCTCCT
TCTTGCGTCCCGTGAGGGTGAGCGATGGCGCGGTGGAGGGCGACGCCGTACATGGTGAGGACTACGCTGAGGATGGTGACGAGGCCGATGGCGCCGAGAG
CGCCGGCCTGGCCGTGCACGGGGGTGTTGCGGAGCGGGCCGGTGAGCGCGAAGGGGCCGACGAGGAGGTAGCCGTGGGCGAGGCCGACCTCGATGCCGCG
GAGCAGCGGGCTGACGGCGGTGCGGTAGGCGGGGAGGTTGGAGAGGTACCATGCGACGAGCGGGCTGCCGATGAAGGGGTCGCCATTGATGGGCTGCACC
ACCTGGTAGTTTGGCTGCAGCACGGACAGAGTCGACACGTGAGAATTACAGCTCGAAGCAGGATAGCTTTTGTACTATGAAATTAGACTGAATTTTAGTG
CAACTAACCTTGTCAGCCTTGATGGCCTTGACGACGAAGCGAGGCCTCCTGGTCGTGAGCGAGGCGCCAGACAGGCCCCTCGGCTTGGAGCACACCAAGC
TGCTGCTGCTGCTCTTCAGCAGCTGGCTCGCCATGGGAGGAGCATACGCGGTGGCCATCGTCTTCCCCTCTGCTTCACGCGCTAGCTCAACTCTGCTGGA
ACTGCTGGAGAAGACTTGTTC