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Detailed information on CNT30249726


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30521214Avena sativaSetaria italica52.8757.6987.5424forward
CNT30516978Avena sativaJuglans regia19.222.5880.52154forward
CNT30629841Avena sativaVigna unguiculata21.4529.483.72172forward
CNT30182270Avena sativaSecale cereale20.5729.8993.94165forward
CNT30292897Avena sativaTriticum aestivum60.3582.1783.68484forward
CNT30222663Avena sativaHordeum vulgare19.230.4394.16154forward
CNT30390478Avena sativaTriticum turgidum60.3540.687.4484forward
CNT30564216Avena sativaActinidia chinensis17.4662.7885140forward
CNT3084712Avena sativaVigna radiata16.3346.2983.21131forward
CNT30438727Avena sativaAegilops tauschii22.6957.5992.31182forward
CNT30135064Avena sativaLolium perenne35.1649.3987.59282forward
CNT3014188Avena sativaZea mays41.0243.0684.8329forward
CNT3027985Avena sativaTheobroma cacao17.3325.682.01139forward
CNT30319122Avena sativaAsparagus officinalis22.1912.0487.08178forward
CNT30104607Avena sativaOryza rufipogon13.2229.5390.57106forward
CNT30578384Avena sativaOryza barthii16.2133.1691.54130forward
CNT30551896Avena sativaOryza brachyantha42.1450.9886.98338forward
CNT30112090Avena sativaFicus carica21.828.5582.29175forward

Expression of CNT30249726

Peptides detected in this lncRNA

>peptide 1 (98 aa)
MQKMDCAEHIHLHLVHRLKPASTQPWMYVVHGKRILLEEVWEVEDVEEEVSPDGAGDAAEEEPSGELRPALGGLQLVGLLLASGEGERWRGGWRRRTW*

>peptide 2 (48 aa)
MARWMATPYMVRTTLRMVTRPMAPSAPAWPCTGVLRSGPVSAKGPTRR*

>peptide 3 (42 aa)
RHCHVKIVLPSVHACKRWIVRNIFIYTWYIDSSQHLHSHGCT*

Sequence

>CNT30249726
GTCGACATTGCCATGTTAAAATAGTACTCCCCTCCGTGCATGCATGCAAAAGATGGATTGTGCGGAACATATTCATTTACACCTGGTACATAGACTCAAG
CCAGCATCTACACAGCCATGGATGTACGTAGTACATGGTAAGAGAATTCTACTTGAAGAAGTATGGGAGGTCGAGGACGTAGAGGAGGAAGTAAGCCCAG
ACGGCGCCGGAGACGCCGCCGAAGAAGAACCCTCCGGTGAACTGCGCCCAGCCCTCGGCGGTCTGCAGCTTGTCGGCCTCCTTCTTGCGTCCGGTGAGGG
TGAGCGATGGCGCGGTGGATGGCGACGCCGTACATGGTGAGGACGACGCTGAGGATGGTGACGAGGCCGATGGCGCCGAGCGCGCCGGCCTGGCCGTGCA
CGGGGGTGTTGCGGAGCGGGCCGGTGAGCGCGAAGGGGCCGACGAGGAGGTAGCCGTGCGCGAGGCCGACCTCGATGCCGCGGAGCAGCGGGCTGACGGC
GGTGCGGTAGGCGGGGAGGTTGGAGAGGTACCATGCGACGAGCGGGCTGGAGGTGACCGGCGTCTCCAGGCTGCCGATGAAGGGGTCGCCGTTGATGGGC
TGCACCACCTGCCTTGACGACGAAGCGCGGCCTCCTGGTCGTGAGTGAGGCACCAGACAGGCCCCTCGGCTTGGAGGACACCAAGCTGCTGCTGCTGCTC
TTCAGCAGCTGGCTCGCCATGGGAGGAGCATACGCGGTAGCCATCGTCTCCCCCCTCGACCTGCTTCACACTCTAGCTCAACTCTGCTACAACTGATCTT
TG