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Detailed information on CNT30249706


BLAST search results

BLAST vs Swiss-Prot:
sp|Q09020|PR4_PHAVU, E-value = 6e-20

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30524561Avena sativaSetaria italica22.5312.5388.36146forward
CNT30533654Avena sativaEucalyptus grandis18.2124.0884.75118forward
CNT30549812Avena sativaIpomoea triloba22.2227.0282.64144forward
CNT30221624Avena sativaHordeum vulgare22.5321.5396.58146forward
CNT30467515Avena sativaSaccharum spontaneum22.5319.8489.73146forward
CNT30135597Avena sativaLolium perenne32.8741.294.84213forward
CNT307034Avena sativaZea mays22.5318.588.36146forward
CNT30346089Avena sativaEragrostis tef22.8426.3389.86148forward
CNT30597257Avena sativaOryza meridionalis22.5329.2693.84146forward
CNT30371492Avena sativaOryza glumipatula22.5327.1993.15146forward
CNT30108688Avena sativaOryza longistaminata22.5326.0293.84146forward
CNT30104475Avena sativaOryza rufipogon22.5325.9893.84146forward
CNT30578401Avena sativaOryza barthii22.5326.1293.84146forward
CNT30581754Avena sativaEchinochloa crusgalli22.5319.0889.04146forward
CNT30118085Avena sativaOryza nivara22.5327.3493.84146forward

Expression of CNT30249706

Peptides detected in this lncRNA

>peptide 1 (91 aa)
GAPPRPTKLPRNPLPPSNRPPHLPQTLARLYIGGGEEEEEKKKQDDLRRELSPVPLLPQPEGRRVLRQEENGRAKAKGPEVQGQREQACDE*

>peptide 2 (48 aa)
MIYDVNSPLFRSFLSQKGGASSDKRKMEEQKPKDQRFKANENKPVMNE*

>peptide 3 (45 aa)
RCTTKTYKATKKSPPTLKSTAPSPANPSSALHRRRRGRRRKEEAR*

>peptide 4 (31 aa)
MCEMVTQGTLSLVICYVMVIIPFLLDGILSH*

Sequence

>CNT30249706
CCGGTGCACCACCAAGACCTACAAAGCTACCAAGAAATCCCCTCCCACCCTCAAATCGACCGCCCCATCTCCCGCAAACCCTAGCTCGGCTCTACATCGG
CGGCGGCGAGGAAGAAGAAGAAAAGAAGAAGCAAGATGATCTACGACGTGAACTCTCCCCTGTTCCGCTCCTTCCTCAGCCAGAAGGGCGGCGCGTCCTC
CGACAAGAGGAAAATGGAAGAGCAAAAGCCAAAGGACCAGAGGTTCAAGGCCAACGAGAACAAGCCTGTGATGAATGAATGAGCCCTGTCCGAACAGTTT
GCCCCTTGCAAGGAATAGCTGCCAATCATGTGACTCCTATTATGTTAAGATGATGGTGTGAACATTTGCTTCATCATTTTGAAAACCTGTTCCGTGCTAT
TTAAGTTGTTTTAGCTGAGCTTTATGTGTGAAATGGTAACTCAGGGCACTCTGAGTCTGGTGATCTGTTATGTTATGGTTATCATCCCCTTTTTGCTTGA
TGGCATTTTGTCTCATTGAGCTTTTTCACTCGCTTTTATTGAGGGGATTCATCTGAGGGAGAATTTGTTGGGAGGCCCTTGGTCTACAGCATCTGAAAAT
TGACTTACGGCATGCAACTTGATATAAGCTCCTGTTTCCTGTTGCCAC